Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK182_RS08980 Genome accession   NZ_CP029491
Coordinates   1835869..1836351 (-) Length   160 a.a.
NCBI ID   WP_019777833.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain 10919     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1830869..1841351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK182_RS08950 (DK181_08950) - 1831651..1832556 (-) 906 WP_019777820.1 HamA C-terminal domain-containing protein -
  DK182_RS08960 (DK181_08960) - 1832777..1833322 (+) 546 Protein_1684 IS30 family transposase -
  DK182_RS08965 (DK181_08965) - 1833479..1834423 (+) 945 WP_002961563.1 magnesium transporter CorA family protein -
  DK182_RS08970 (DK181_08970) - 1834453..1835142 (+) 690 WP_019771944.1 DUF1129 domain-containing protein -
  DK182_RS08975 (DK181_08975) rpsR 1835572..1835811 (-) 240 WP_002961569.1 30S ribosomal protein S18 -
  DK182_RS08980 (DK181_08980) ssb 1835869..1836351 (-) 483 WP_019777833.1 single-stranded DNA-binding protein Machinery gene
  DK182_RS08985 (DK181_08985) rpsF 1836363..1836653 (-) 291 WP_002961573.1 30S ribosomal protein S6 -
  DK182_RS08990 (DK181_08990) - 1837084..1837754 (-) 671 Protein_1690 TMEM175 family protein -
  DK182_RS10545 - 1837917..1838093 (-) 177 WP_019777830.1 hypothetical protein -
  DK182_RS08995 (DK181_08995) - 1838553..1838729 (-) 177 WP_019769837.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DK182_RS09000 (DK181_09000) - 1838749..1838934 (-) 186 WP_019771033.1 hypothetical protein -
  DK182_RS09005 (DK181_09005) - 1839017..1839190 (-) 174 WP_019769835.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  DK182_RS09010 (DK181_09010) - 1839212..1839397 (-) 186 WP_019769836.1 hypothetical protein -
  DK182_RS09015 (DK181_09015) - 1839691..1839882 (-) 192 WP_002963416.1 bacteriocin -
  DK182_RS09020 (DK181_09020) - 1840184..1840408 (-) 225 WP_002963417.1 garvicin Q family class II bacteriocin -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17738.44 Da        Isoelectric Point: 5.2279

>NTDB_id=293231 DK182_RS08980 WP_019777833.1 1835869..1836351(-) (ssb) [Streptococcus sobrinus strain 10919]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRATREANGKGSYNAGGNNSSNFGGGQQQATPNFGRDESPFGNSNPMDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=293231 DK182_RS08980 WP_019777833.1 1835869..1836351(-) (ssb) [Streptococcus sobrinus strain 10919]
ATGATTAATAATGTCGTACTCGTGGGTCGTATGACTCGGGATGCCGAGCTTCGTTACACCCCATCCAATCAAGCTGTTGC
AACCTTCAGTTTAGCTGTTAACCGCAACTTCAAAAACCAAAATGGTGAGCGTGAGGCTGATTTCATCAACTGTGTTATCT
GGCGTCAGCAAGCCGAAAACTTGGCCAATTGGGCTAAGAAAGGGGCTTTGATTGGGATTACAGGTCGCATTCAGACGCGT
AATTATGAAAACCAACAAGGTCAACGGGTTTATGTAACCGAGGTTGTCGCTGACAATTTCCAACTTCTGGAAAGTCGTGC
CACTCGGGAAGCTAACGGTAAAGGTTCCTACAATGCTGGCGGCAATAACTCATCAAACTTTGGTGGTGGCCAACAGCAAG
CAACACCGAACTTCGGCCGTGATGAAAGTCCATTTGGTAATTCTAACCCAATGGATATTTCCGATGACGACCTTCCATTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.176

100

0.65
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.631
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.054

69.375

0.375
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

68.125

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

68.125

0.362

Multiple sequence alignment