Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SALB1_RS11550 Genome accession   NZ_CP029488
Coordinates   2570874..2571419 (+) Length   181 a.a.
NCBI ID   WP_109994011.1    Uniprot ID   A0A2Z3JAB6
Organism   Salinisphaera sp. LB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2565874..2576419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALB1_RS11540 (SALB1_2368) uvrA 2566124..2569072 (-) 2949 WP_109994009.1 excinuclease ABC subunit UvrA -
  SALB1_RS11545 (SALB1_2370) - 2569282..2570652 (+) 1371 WP_109994010.1 MFS transporter -
  SALB1_RS11550 (SALB1_2371) ssb 2570874..2571419 (+) 546 WP_109994011.1 single-stranded DNA-binding protein Machinery gene
  SALB1_RS19725 (SALB1_2372) - 2571479..2571778 (+) 300 WP_109994012.1 metal-sensing transcriptional repressor -
  SALB1_RS11560 (SALB1_2373) - 2571791..2572201 (-) 411 WP_109994013.1 DUF6691 family protein -
  SALB1_RS11565 (SALB1_2374) - 2572198..2572638 (-) 441 WP_222843030.1 YeeE/YedE family protein -
  SALB1_RS11570 (SALB1_2375) - 2572660..2573898 (-) 1239 WP_109994014.1 FAD/NAD(P)-binding oxidoreductase -
  SALB1_RS11575 (SALB1_2376) - 2574038..2574907 (+) 870 WP_109995401.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19150.75 Da        Isoelectric Point: 4.8070

>NTDB_id=293128 SALB1_RS11550 WP_109994011.1 2570874..2571419(+) (ssb) [Salinisphaera sp. LB1]
MASRGVNKAIIIGNLGADPETRYTAGGTAVTNVNVATSESWRDKSSGEMQERTEWHRVVFFARLAEVAGEYLRKGSKVYV
EGRIQTRKWQNKDGVDQYTTEIVANEMQMLDSRGAGQGGSAPFGGGGQRSQGGAQGGGQNYGGSQGGGQSSNQGGAPQYQ
RPQPAGGDPGFDDDLDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=293128 SALB1_RS11550 WP_109994011.1 2570874..2571419(+) (ssb) [Salinisphaera sp. LB1]
ATGGCAAGTCGAGGCGTCAACAAGGCCATCATTATCGGTAACCTCGGGGCCGATCCGGAAACGCGCTATACCGCGGGCGG
TACGGCGGTCACCAACGTCAATGTCGCGACCTCGGAAAGCTGGCGCGACAAGTCGTCGGGTGAAATGCAGGAACGCACCG
AATGGCATCGGGTGGTGTTCTTCGCCCGCCTGGCGGAAGTGGCCGGCGAGTATCTGCGCAAGGGGTCCAAGGTCTACGTC
GAGGGCCGGATCCAGACGCGCAAGTGGCAGAACAAGGACGGTGTCGATCAGTACACCACCGAAATCGTGGCCAACGAGAT
GCAGATGCTCGATTCCCGCGGCGCCGGCCAGGGCGGCAGCGCGCCGTTCGGCGGCGGGGGGCAGCGCAGCCAGGGCGGAG
CCCAGGGTGGCGGCCAAAATTACGGCGGCAGCCAGGGTGGTGGCCAGAGCAGTAACCAGGGCGGCGCGCCGCAGTACCAG
CGCCCGCAGCCGGCCGGCGGCGATCCCGGCTTCGATGACGACCTGGACGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3JAB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.054

100

0.552
  ssb Glaesserella parasuis strain SC1401

53.261

100

0.541
  ssb Neisseria gonorrhoeae MS11

47.753

98.343

0.47
  ssb Neisseria meningitidis MC58

47.191

98.343

0.464

Multiple sequence alignment