Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SSED_RS21755 Genome accession   NC_009831
Coordinates   5129187..5130710 (+) Length   507 a.a.
NCBI ID   WP_012144504.1    Uniprot ID   A8G102
Organism   Shewanella sediminis HAW-EB3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5124187..5135710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSED_RS21735 (Ssed_4167) ilvY 5125011..5125883 (+) 873 WP_012144500.1 HTH-type transcriptional activator IlvY -
  SSED_RS21740 (Ssed_4168) - 5125970..5126797 (+) 828 WP_012144501.1 ABC transporter substrate-binding protein -
  SSED_RS21745 (Ssed_4169) - 5126930..5127733 (+) 804 WP_012144502.1 GGDEF domain-containing protein -
  SSED_RS21750 (Ssed_4170) cysE 5127799..5128590 (-) 792 WP_012144503.1 serine O-acetyltransferase -
  SSED_RS21755 (Ssed_4171) comM 5129187..5130710 (+) 1524 WP_012144504.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SSED_RS21760 (Ssed_4172) - 5130753..5131799 (-) 1047 WP_012144505.1 ABC transporter substrate-binding protein -
  SSED_RS21765 (Ssed_4173) - 5132049..5132957 (+) 909 WP_012144506.1 acyltransferase -
  SSED_RS21770 (Ssed_4174) - 5132962..5133882 (+) 921 WP_012144507.1 acyltransferase -
  SSED_RS21775 (Ssed_4175) - 5134365..5135072 (+) 708 WP_049772188.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55362.53 Da        Isoelectric Point: 7.8208

>NTDB_id=29214 SSED_RS21755 WP_012144504.1 5129187..5130710(+) (comM) [Shewanella sediminis HAW-EB3]
MAIACVATRASKGVEAPSVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSAIINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQVPKNSLKDHEFVGELALSGHIRHCHGLLPVIVDARKQDTTLVIPLDNRDDAELVGYQKVHFACHL
QTLSEYLHGQTPLPGIQTELEWIDTETQEHTSCMSEVIGQYQAKLGLEIAAAGNHNLLLLGPPGTGKSMLASRMMQLLPP
LSYDEALEVAALHSVAGMSLAPKQFYRRPFRNPHHTSSAISLVGGGSNPKPGEISLAHRGVLFLDEVVEFPRRVLDCLRE
PMESGEVVISRAAAKLTFASRFQLVAAMNPSPCGDVDNARATQDQIQRYLSRLSGPFLDRFDLTIEVPKLPAGALTQKVD
MGETSESIAIRVKSARELQLARAGVLNSELSGRQLQESGGFEQSDLLFLEQSVNKLGLSVRSFHRLQRVARTIADLQHSK
RVDRSHIAQALGYRAMDRLLNSLKSAY

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=29214 SSED_RS21755 WP_012144504.1 5129187..5130710(+) (comM) [Shewanella sediminis HAW-EB3]
ATGGCAATCGCCTGTGTCGCCACCCGTGCCAGCAAAGGAGTCGAGGCCCCCTCGGTAACAGTAGAGGTTCATCTGAGCAA
TGGCCTGCCAGCCTTCAACCTAGTCGGGCTTCCCGAGACCTCAGTCAAGGAAGCTAAAGAGCGGGTTCGCAGCGCGATTA
TCAATGCTGGGTTTGAATTTCCCATGCGCCGTATCACGGTCAACCTGGCCCCAGCCGATCTCCCCAAACAGGGGGGGCGC
TACGACCTTCCCATCGCCATCGGTATCCTTGCCGCATCTAAGCAGGTTCCTAAAAACTCACTCAAAGACCATGAGTTTGT
CGGCGAGCTGGCACTCTCCGGCCATATACGTCACTGCCATGGCCTATTGCCTGTGATTGTCGATGCCCGCAAACAAGATA
CCACCTTGGTCATTCCGCTGGATAACAGGGATGATGCCGAACTGGTGGGTTATCAAAAAGTCCATTTCGCCTGTCATCTG
CAAACCCTGAGCGAATATCTGCACGGACAGACGCCACTGCCGGGTATACAGACCGAGCTTGAGTGGATAGATACAGAGAC
GCAAGAACACACAAGCTGTATGAGCGAAGTCATAGGCCAATACCAGGCCAAGCTGGGTTTAGAGATAGCGGCCGCCGGTA
ATCATAACCTACTTCTGCTCGGCCCACCCGGCACCGGAAAGAGCATGCTGGCCAGCCGCATGATGCAACTATTGCCTCCG
TTGAGTTATGACGAGGCACTCGAGGTGGCGGCGCTTCACTCAGTAGCCGGCATGTCCCTCGCGCCTAAGCAATTTTATCG
GCGTCCATTTCGAAACCCACACCACACCAGCTCGGCCATCTCTTTAGTCGGAGGTGGCAGCAATCCCAAACCCGGAGAGA
TCTCATTGGCGCACCGGGGAGTACTCTTTTTAGACGAGGTGGTCGAGTTTCCACGTCGGGTACTCGATTGTCTTCGAGAG
CCGATGGAAAGCGGCGAGGTCGTCATCTCCCGCGCCGCGGCTAAACTCACCTTCGCCAGTCGCTTCCAATTGGTTGCGGC
GATGAATCCAAGCCCTTGTGGCGATGTCGATAACGCCAGGGCGACACAAGATCAGATCCAGCGATACCTGTCGCGACTGT
CAGGGCCATTTCTGGATAGATTCGATCTGACCATTGAGGTGCCTAAACTGCCTGCCGGCGCCTTGACCCAAAAAGTCGAT
ATGGGAGAAACCAGTGAATCGATAGCAATTCGGGTGAAGAGTGCCAGAGAGCTGCAACTTGCCCGTGCCGGTGTACTTAA
CAGCGAATTGAGTGGACGACAGCTACAAGAGAGTGGCGGGTTCGAACAGTCCGATCTGCTTTTTCTCGAACAGAGCGTCA
ACAAACTGGGCTTATCGGTGAGAAGCTTTCATCGATTGCAACGGGTGGCTCGTACCATTGCAGATCTGCAACATAGCAAG
CGCGTCGATCGCAGCCACATTGCTCAGGCACTGGGTTATCGTGCCATGGATAGATTATTGAATAGCCTTAAATCGGCTTA
TTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8G102

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.03

100

0.55
  comM Haemophilus influenzae Rd KW20

54.813

100

0.55
  comM Vibrio campbellii strain DS40M4

54.635

100

0.546
  comM Glaesserella parasuis strain SC1401

52.86

100

0.529
  comM Legionella pneumophila str. Paris

47.937

100

0.481
  comM Legionella pneumophila strain ERS1305867

47.937

100

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.126

100

0.422

Multiple sequence alignment