Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HMF8227_RS14705 Genome accession   NZ_CP029347
Coordinates   3164374..3165888 (+) Length   504 a.a.
NCBI ID   WP_109340908.1    Uniprot ID   A0A2S2E914
Organism   Saliniradius amylolyticus strain HMF8227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3159374..3170888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMF8227_RS14690 (HMF8227_02956) ilvA 3160069..3161616 (-) 1548 WP_109340905.1 threonine ammonia-lyase, biosynthetic -
  HMF8227_RS14695 (HMF8227_02957) ilvD 3161618..3163465 (-) 1848 WP_109340906.1 dihydroxy-acid dehydratase -
  HMF8227_RS14700 (HMF8227_02958) - 3163703..3164317 (+) 615 WP_109340907.1 trimeric intracellular cation channel family protein -
  HMF8227_RS14705 (HMF8227_02959) comM 3164374..3165888 (+) 1515 WP_109340908.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HMF8227_RS14710 (HMF8227_02960) - 3166085..3167965 (+) 1881 WP_109340909.1 formylglycine-generating enzyme family protein -
  HMF8227_RS14715 (HMF8227_02961) ilvY 3168035..3168892 (-) 858 WP_109341128.1 HTH-type transcriptional activator IlvY -
  HMF8227_RS14720 (HMF8227_02962) ilvC 3169017..3170501 (+) 1485 WP_109340910.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55231.94 Da        Isoelectric Point: 7.8820

>NTDB_id=291848 HMF8227_RS14705 WP_109340908.1 3164374..3165888(+) (comM) [Saliniradius amylolyticus strain HMF8227]
MSLAIVQTRACLGIEAPKVSVEVHLSNGLPAFNIVGLPEASVRESRDRVRSALTNSGFEFPPKRITVNLAPADLPKDGSR
FDLPIAIGIIAACHDLPKERLQVSEFVGELALSGELRPISGVLPSAYACHQAGHQLVFPRDNAGEAALIRQADLYPACQL
LEVFHHLNGQEQLPVYQSQIPEQAPDSTLDLQDVVGQGPAKRALEIAAAGGHNLLLTGPPGTGKTMLANRLPGLLPEMSE
HEALETAAIHSVTGKPLTPDSWRQRPFRSPHHTSSAVALVGGGSQPRPGEISLAHNGVLFLDELPEFDRKVLEVLREPLE
AGKVSISRAARQAEFPARFQLVAAMNPSPTGSAQDRRATTEQTLRYLNRLSGPFLERIDLQVEVPKLPSGQFAQRIQDRG
EPTALVRQRVLQARQRQWHRTDKLNAHLSAREVDQHCSLSQADRQFLEQAAEQLGLSIRSFHRLLKIGRTLADLEGKANI
RRHHLTEALQYRALDRLIAILSSN

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=291848 HMF8227_RS14705 WP_109340908.1 3164374..3165888(+) (comM) [Saliniradius amylolyticus strain HMF8227]
ATGTCACTGGCAATCGTGCAGACCCGGGCGTGTTTGGGCATCGAAGCCCCCAAGGTATCGGTGGAGGTTCATCTGTCTAA
CGGCCTTCCGGCCTTTAATATTGTCGGCTTGCCCGAGGCGTCGGTGAGAGAGTCCCGGGATCGGGTGCGCTCGGCGCTGA
CCAACTCTGGATTCGAATTCCCACCCAAACGCATTACCGTTAATCTCGCTCCGGCAGATCTTCCTAAAGACGGCAGTCGC
TTTGATTTACCGATTGCCATCGGCATTATCGCTGCCTGTCATGACCTACCTAAAGAACGTTTGCAGGTCTCAGAATTTGT
TGGCGAACTTGCCTTGTCAGGAGAGCTGCGCCCCATCAGTGGTGTTTTGCCCAGCGCCTATGCCTGCCATCAGGCCGGTC
ATCAGCTGGTGTTCCCCCGCGACAATGCCGGTGAAGCGGCACTAATCCGCCAGGCCGACTTGTACCCGGCTTGCCAGCTC
CTGGAAGTCTTTCATCATCTGAACGGCCAAGAACAGCTGCCCGTCTACCAATCGCAGATACCAGAACAGGCACCAGACTC
TACACTTGATTTGCAAGATGTGGTCGGGCAGGGACCTGCCAAGCGGGCACTTGAGATCGCCGCTGCCGGTGGTCATAACC
TGCTTCTTACCGGTCCACCGGGCACCGGCAAGACAATGCTGGCCAATCGCCTGCCTGGGCTATTACCAGAAATGAGCGAA
CATGAAGCACTGGAAACCGCCGCTATTCACTCGGTGACTGGGAAGCCCTTAACTCCCGACAGTTGGCGTCAGCGTCCATT
TCGATCCCCCCATCACACAAGTTCGGCAGTAGCACTGGTAGGCGGAGGCAGTCAGCCAAGACCAGGGGAGATATCTTTGG
CCCATAATGGGGTGCTGTTTTTAGACGAGTTGCCGGAGTTTGATCGCAAAGTATTGGAAGTCCTGCGCGAGCCGTTGGAG
GCCGGGAAGGTTTCTATCTCCCGTGCCGCCCGTCAGGCGGAATTTCCGGCCCGATTTCAGTTAGTGGCCGCTATGAATCC
GTCGCCCACAGGTTCGGCCCAGGACCGAAGAGCCACCACAGAGCAAACATTGCGTTACCTGAATCGCCTGTCCGGTCCCT
TCTTAGAGCGCATCGATTTGCAGGTAGAAGTGCCTAAGCTGCCCTCGGGACAGTTTGCCCAACGCATCCAAGACCGCGGT
GAGCCTACCGCCTTGGTGCGTCAGCGTGTGCTGCAGGCTCGTCAGCGCCAGTGGCATAGAACCGACAAGCTCAACGCCCA
CCTCAGTGCCCGGGAAGTCGATCAGCATTGCTCCCTTTCCCAGGCAGACCGGCAATTTCTGGAGCAGGCCGCCGAACAAC
TCGGCCTCTCGATCCGCAGCTTTCACCGGCTCCTCAAAATCGGGCGCACCCTGGCCGATTTGGAAGGCAAAGCAAACATT
CGCCGTCATCACCTGACCGAGGCACTGCAATATCGAGCACTGGATCGACTGATTGCCATTTTGAGCAGTAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2E914

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.208

100

0.593
  comM Vibrio campbellii strain DS40M4

57.822

100

0.579
  comM Haemophilus influenzae Rd KW20

56.974

100

0.575
  comM Glaesserella parasuis strain SC1401

55.666

99.802

0.556
  comM Legionella pneumophila str. Paris

50.497

99.802

0.504
  comM Legionella pneumophila strain ERS1305867

50.497

99.802

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.464

Multiple sequence alignment