Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HMF8227_RS01330 | Genome accession | NZ_CP029347 |
| Coordinates | 274324..274863 (+) | Length | 179 a.a. |
| NCBI ID | WP_109338467.1 | Uniprot ID | A0A2S2DZE5 |
| Organism | Saliniradius amylolyticus strain HMF8227 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 269324..279863
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HMF8227_RS01315 (HMF8227_00267) | uvrA | 269480..272314 (-) | 2835 | WP_109338464.1 | excinuclease ABC subunit UvrA | - |
| HMF8227_RS01320 (HMF8227_00268) | - | 272502..273866 (+) | 1365 | WP_109338465.1 | MFS transporter | - |
| HMF8227_RS01325 (HMF8227_00269) | - | 273866..274243 (+) | 378 | WP_109338466.1 | DUF6746 family protein | - |
| HMF8227_RS01330 (HMF8227_00270) | ssb | 274324..274863 (+) | 540 | WP_109338467.1 | single-stranded DNA-binding protein | Machinery gene |
| HMF8227_RS14995 (HMF8227_00271) | - | 275153..276091 (+) | 939 | WP_162558449.1 | 2-oxo acid dehydrogenase subunit E2 | - |
| HMF8227_RS01340 (HMF8227_00272) | - | 276088..276696 (+) | 609 | WP_162558450.1 | PilN domain-containing protein | - |
| HMF8227_RS01345 (HMF8227_00273) | - | 276693..277337 (+) | 645 | WP_109338470.1 | type II secretion system protein M | - |
| HMF8227_RS01350 (HMF8227_00274) | - | 277337..277690 (+) | 354 | WP_162558451.1 | hypothetical protein | - |
| HMF8227_RS01355 (HMF8227_00275) | mshL | 277680..279371 (+) | 1692 | WP_109338472.1 | pilus (MSHA type) biogenesis protein MshL | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 19373.31 Da Isoelectric Point: 4.9265
>NTDB_id=291832 HMF8227_RS01330 WP_109338467.1 274324..274863(+) (ssb) [Saliniradius amylolyticus strain HMF8227]
MASRGVNKVILVGNLGQDPDIRYTANGKAVANLTLATSESWKDQSGQIQEKTEWHRVVMFGKLAEIAGEYLRKGSQIYVE
GKLQTRKWQDQNGQDKYTTEIVLDPFNGTMQMLGGRGGQSGGGQGGGPAQGGYGQPQGGGYGQSQPQQRPAPQQNQGGQN
QQPGQMPEPDFDFDDDIPF
MASRGVNKVILVGNLGQDPDIRYTANGKAVANLTLATSESWKDQSGQIQEKTEWHRVVMFGKLAEIAGEYLRKGSQIYVE
GKLQTRKWQDQNGQDKYTTEIVLDPFNGTMQMLGGRGGQSGGGQGGGPAQGGYGQPQGGGYGQSQPQQRPAPQQNQGGQN
QQPGQMPEPDFDFDDDIPF
Nucleotide
Download Length: 540 bp
>NTDB_id=291832 HMF8227_RS01330 WP_109338467.1 274324..274863(+) (ssb) [Saliniradius amylolyticus strain HMF8227]
ATGGCGAGCAGAGGCGTCAACAAAGTAATTCTGGTCGGTAATCTGGGGCAGGACCCGGATATCCGTTATACAGCCAATGG
TAAAGCCGTGGCAAATCTAACCCTGGCGACGTCTGAAAGCTGGAAAGATCAGAGCGGTCAGATTCAGGAGAAAACCGAAT
GGCACCGGGTAGTGATGTTCGGCAAGCTGGCTGAGATTGCCGGTGAATACTTGCGTAAAGGCAGCCAGATATATGTTGAA
GGCAAGCTGCAAACCCGCAAGTGGCAGGATCAGAACGGTCAGGACAAATACACCACTGAAATCGTTTTGGACCCTTTCAA
TGGCACCATGCAAATGCTTGGTGGTCGCGGTGGTCAAAGCGGTGGTGGTCAAGGTGGCGGCCCTGCCCAGGGTGGCTATG
GCCAGCCTCAGGGCGGCGGTTATGGTCAGTCGCAACCTCAGCAACGTCCAGCTCCGCAACAGAATCAGGGTGGTCAAAAT
CAGCAGCCGGGGCAGATGCCGGAGCCGGACTTTGACTTCGATGATGATATTCCGTTTTAA
ATGGCGAGCAGAGGCGTCAACAAAGTAATTCTGGTCGGTAATCTGGGGCAGGACCCGGATATCCGTTATACAGCCAATGG
TAAAGCCGTGGCAAATCTAACCCTGGCGACGTCTGAAAGCTGGAAAGATCAGAGCGGTCAGATTCAGGAGAAAACCGAAT
GGCACCGGGTAGTGATGTTCGGCAAGCTGGCTGAGATTGCCGGTGAATACTTGCGTAAAGGCAGCCAGATATATGTTGAA
GGCAAGCTGCAAACCCGCAAGTGGCAGGATCAGAACGGTCAGGACAAATACACCACTGAAATCGTTTTGGACCCTTTCAA
TGGCACCATGCAAATGCTTGGTGGTCGCGGTGGTCAAAGCGGTGGTGGTCAAGGTGGCGGCCCTGCCCAGGGTGGCTATG
GCCAGCCTCAGGGCGGCGGTTATGGTCAGTCGCAACCTCAGCAACGTCCAGCTCCGCAACAGAATCAGGGTGGTCAAAAT
CAGCAGCCGGGGCAGATGCCGGAGCCGGACTTTGACTTCGATGATGATATTCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.088 |
100 |
0.631 |
| ssb | Glaesserella parasuis strain SC1401 |
54.688 |
100 |
0.587 |
| ssb | Neisseria meningitidis MC58 |
45.304 |
100 |
0.458 |
| ssb | Neisseria gonorrhoeae MS11 |
45.304 |
100 |
0.458 |