Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DIR46_RS10185 Genome accession   NZ_CP029343
Coordinates   2193405..2194922 (+) Length   505 a.a.
NCBI ID   WP_109345141.1    Uniprot ID   A0A2S2DHE1
Organism   Massilia oculi strain CCUG 43427     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2188405..2199922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIR46_RS10160 (DIR46_10160) - 2188946..2190361 (-) 1416 WP_162819486.1 heavy metal sensor histidine kinase -
  DIR46_RS10165 (DIR46_10165) - 2190358..2191029 (-) 672 WP_109345139.1 heavy metal response regulator transcription factor -
  DIR46_RS10170 (DIR46_10170) - 2191181..2191498 (+) 318 WP_162819487.1 CzcE family metal-binding protein -
  DIR46_RS10175 (DIR46_10175) - 2191504..2191896 (+) 393 WP_109345140.1 DUF305 domain-containing protein -
  DIR46_RS10180 (DIR46_10180) - 2191893..2193284 (+) 1392 WP_370659963.1 hypothetical protein -
  DIR46_RS10185 (DIR46_10185) comM 2193405..2194922 (+) 1518 WP_109345141.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DIR46_RS27620 - 2194925..2195050 (-) 126 WP_282433186.1 hypothetical protein -
  DIR46_RS10190 (DIR46_10190) - 2195100..2196053 (-) 954 WP_109345142.1 GlxA family transcriptional regulator -
  DIR46_RS10195 (DIR46_10195) - 2196050..2196325 (-) 276 WP_109345143.1 hypothetical protein -
  DIR46_RS10200 (DIR46_10200) - 2196520..2197020 (+) 501 WP_205289106.1 hypothetical protein -
  DIR46_RS10205 (DIR46_10205) - 2197029..2197763 (+) 735 WP_109345144.1 ABC transporter ATP-binding protein -
  DIR46_RS10210 (DIR46_10210) - 2197760..2199307 (+) 1548 WP_109345145.1 hypothetical protein -
  DIR46_RS10215 (DIR46_10215) - 2199384..2199725 (+) 342 WP_109345146.1 DUF1840 domain-containing protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 53985.82 Da        Isoelectric Point: 7.8669

>NTDB_id=291795 DIR46_RS10185 WP_109345141.1 2193405..2194922(+) (comM) [Massilia oculi strain CCUG 43427]
MSLAVLRSRALAGMEAPAVNVEVHLANGLPGIAIVGLPDTEVREAKDRVRAALQNSGFDLPARRITINLAPADLPKESGR
FDLPIALGILAASRQIRHDALHRYEFAGELSLSGELRPVRGALAMAFAMARDGDDDMRAFILPLANADEAALVEAAAILP
ARTLLEVCAHFANAPDAPKLARHHGPGMARLPSYPDFAEVKGQQHAKRALEVAAAGAHSVLLVGPPGAGKSMLAARLPGL
LPPMSEAEALESAAVQSLAGGFAPERWRQRPFRSPHHTTSGVALVGGGNLPRPGEVSLAHHGVLFLDELPEFERRVLEVL
REPLESGSITISRAAHQADFPARFQLIAAMNPCPCGWLGHASGKCRCTPDAVLRYQGRISGPLLDRIDIQLPVMAMALEG
MGAQADGESSASIAQRVAQAHARQLARQGRTNSGLGPGEIDRHCAPDEAGRRLLHDAARHLHWSARAYHRVLKVARTIAD
LADVDEVRSKHVAEAIGYRRALRDD

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=291795 DIR46_RS10185 WP_109345141.1 2193405..2194922(+) (comM) [Massilia oculi strain CCUG 43427]
ATGAGCCTGGCCGTCCTGAGAAGCCGCGCCCTGGCCGGCATGGAAGCGCCCGCAGTCAATGTCGAAGTCCACCTTGCCAA
CGGCCTGCCTGGCATCGCGATCGTCGGCCTGCCCGATACCGAGGTGCGCGAAGCCAAGGACCGTGTACGCGCCGCGCTGC
AGAATTCCGGCTTCGACCTCCCGGCGCGCCGCATCACGATCAACCTGGCGCCGGCCGACCTGCCGAAAGAGTCCGGCCGT
TTCGACCTGCCCATCGCGCTGGGCATCCTTGCCGCCTCGCGCCAGATCCGCCACGATGCGCTGCACCGCTACGAATTCGC
CGGCGAACTGTCGCTGTCGGGTGAATTACGCCCGGTGCGCGGCGCGCTGGCGATGGCGTTCGCGATGGCGCGTGACGGTG
ATGATGACATGCGCGCCTTCATCCTGCCGCTGGCCAACGCCGACGAAGCGGCGCTGGTCGAGGCGGCCGCAATCCTTCCG
GCGCGCACCTTGCTCGAGGTCTGCGCCCACTTCGCCAACGCGCCCGACGCGCCGAAGCTGGCGCGCCATCATGGCCCCGG
CATGGCGCGGCTGCCTTCCTATCCCGACTTCGCCGAGGTCAAGGGCCAGCAGCACGCCAAGCGCGCGCTCGAGGTGGCGG
CGGCCGGAGCGCACTCCGTCCTGCTGGTCGGCCCGCCAGGCGCCGGCAAGAGCATGCTGGCGGCGCGCCTGCCCGGCCTG
CTGCCGCCGATGAGCGAAGCCGAGGCGCTCGAATCGGCCGCCGTACAGTCGCTGGCCGGCGGCTTCGCGCCCGAACGCTG
GCGCCAGCGGCCGTTTCGCAGTCCGCATCACACGACGTCCGGCGTGGCCCTGGTCGGCGGCGGCAACCTGCCGCGGCCGG
GCGAGGTGTCGCTGGCCCATCATGGGGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGAGCGGCGCGTACTGGAAGTGCTG
CGCGAACCGCTGGAATCGGGATCGATCACGATCTCGCGCGCGGCCCACCAGGCCGACTTCCCGGCGCGCTTCCAGCTGAT
CGCGGCGATGAATCCCTGCCCCTGTGGCTGGCTGGGCCATGCCAGCGGCAAGTGCCGCTGCACGCCGGACGCCGTGCTGC
GCTACCAGGGGCGCATATCGGGGCCTCTGCTCGACCGCATCGACATCCAGCTGCCGGTGATGGCCATGGCGCTGGAAGGC
ATGGGCGCGCAGGCCGATGGCGAATCGAGTGCGAGCATCGCGCAACGCGTGGCGCAAGCCCATGCGCGCCAGCTCGCGCG
CCAGGGACGGACCAACAGCGGGCTGGGGCCGGGCGAGATCGATCGCCATTGCGCGCCCGATGAGGCCGGGCGCCGGCTGC
TGCACGACGCGGCCCGGCACCTGCACTGGTCGGCGCGGGCCTACCACCGCGTGCTCAAGGTGGCGCGCACGATCGCCGAC
CTGGCGGACGTGGATGAGGTGAGGTCGAAGCACGTGGCCGAGGCGATCGGGTATCGGCGCGCGCTGCGCGACGACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-499)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2DHE1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

52.39

99.406

0.521
  comM Glaesserella parasuis strain SC1401

51.485

100

0.515
  comM Vibrio cholerae strain A1552

51.297

99.208

0.509
  comM Haemophilus influenzae Rd KW20

49.412

100

0.499
  comM Legionella pneumophila str. Paris

48.738

100

0.497
  comM Legionella pneumophila strain ERS1305867

48.738

100

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.275

100

0.467

Multiple sequence alignment