Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DGM93_RS02355 Genome accession   NZ_CP029277
Coordinates   571583..573103 (-) Length   506 a.a.
NCBI ID   WP_039568535.1    Uniprot ID   A0AB34QKL8
Organism   Xanthomonas phaseoli pv. phaseoli strain PR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 566583..578103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM93_RS02335 (DGM93_02530) - 567222..568343 (+) 1122 WP_017158196.1 acyl-CoA desaturase -
  DGM93_RS02340 (DGM93_02535) - 568408..569970 (-) 1563 WP_039568533.1 EAL domain-containing protein -
  DGM93_RS02345 (DGM93_02540) - 570349..570525 (+) 177 WP_017158194.1 hypothetical protein -
  DGM93_RS02350 (DGM93_02545) - 570753..571250 (-) 498 WP_039568534.1 lipocalin family protein -
  DGM93_RS02355 (DGM93_02550) comM 571583..573103 (-) 1521 WP_039568535.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DGM93_RS02360 (DGM93_02555) - 573119..573397 (-) 279 WP_017156738.1 accessory factor UbiK family protein -
  DGM93_RS02365 (DGM93_02560) - 573551..573925 (+) 375 WP_008574841.1 P-II family nitrogen regulator -
  DGM93_RS02370 (DGM93_02570) - 574409..576394 (+) 1986 WP_039587904.1 beta-N-acetylglucosaminidase domain-containing protein -
  DGM93_RS02375 (DGM93_02575) - 576601..577257 (-) 657 WP_039573547.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53973.70 Da        Isoelectric Point: 8.5251

>NTDB_id=291563 DGM93_RS02355 WP_039568535.1 571583..573103(-) (comM) [Xanthomonas phaseoli pv. phaseoli strain PR1]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASPVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARASRSVDFPARFQLIAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGENSASVRTRVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSP
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=291563 DGM93_RS02355 WP_039568535.1 571583..573103(-) (comM) [Xanthomonas phaseoli pv. phaseoli strain PR1]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCCACCCAGATCGTGGGCCTACCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGTGCCGCCCTGC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCCGATCTACCGAAAGAAGGCGGCCGG
TTCGACCTGCCGATCGCTCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTGACCGGCGAGCTGCGCGGCGTCGACGGCGTGCTGCCCGCGGCATTGGCGGCCGCGCAGGCCGGGC
GTCGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGATGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCTGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGACGTACGCGGCCAACCGCACGCACGTCGCGCGCTGGAGATCGCCGCCGCCGGTGGGCATCATC
TATTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCTGGTCTATTGCCCGAGGCCAGCGAA
GCAGAGGCACTGGAAACCGCAGCGATCACCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGCCCCTA
CCGCGCCCCGCACCACACCGCCAGCCCAGTGGCCCTGGTCGGCGGCGGCACGCACCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCTTGGAAGTGTTGCGCGAGCCACTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGTCACGCAGCGTGGATTTTCCGGCGCGCTTCCAACTAATCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGTCGCTACCGCAGCCGCA
TCTCGGGCCCGTTGCTGGACCGCATCGACCTGCATGTGGAAGTGCCGCGCCTTCCGCCTCAGGCGCTGCGCAGCGGCAAC
CTTGGTGAAAACAGCGCCAGCGTGCGGACGCGCGTGGTCGCCGCACGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
TGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGCCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCACGCTCGATGCATCGCATCCTGCGCGTTGCACGCACCATCGCCGATCTCGACGACAGCCCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.929

100

0.559
  comM Haemophilus influenzae Rd KW20

54.99

100

0.555
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.71

98.221

0.508
  comM Legionella pneumophila strain ERS1305867

51.71

98.221

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.453

Multiple sequence alignment