Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DGM98_RS19695 Genome accession   NZ_CP029275
Coordinates   4558038..4559558 (+) Length   506 a.a.
NCBI ID   WP_099802461.1    Uniprot ID   -
Organism   Xanthomonas citri strain M11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4553038..4564558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM98_RS19675 (DGM98_20615) - 4553892..4554548 (+) 657 WP_007963435.1 RIO1 family regulatory kinase/ATPase -
  DGM98_RS19680 (DGM98_20620) - 4554751..4556736 (-) 1986 WP_099802460.1 beta-N-acetylglucosaminidase domain-containing protein -
  DGM98_RS19685 (DGM98_20630) - 4557215..4557589 (-) 375 WP_191480812.1 P-II family nitrogen regulator -
  DGM98_RS19690 (DGM98_20635) - 4557744..4558022 (+) 279 WP_022560200.1 accessory factor UbiK family protein -
  DGM98_RS19695 (DGM98_20640) comM 4558038..4559558 (+) 1521 WP_099802461.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DGM98_RS19700 (DGM98_20645) - 4559892..4560401 (+) 510 WP_015471471.1 lipocalin family protein -
  DGM98_RS19705 (DGM98_20650) - 4560632..4560808 (-) 177 WP_017158194.1 hypothetical protein -
  DGM98_RS19710 (DGM98_20655) - 4561190..4562752 (+) 1563 WP_099802462.1 EAL domain-containing protein -
  DGM98_RS19715 (DGM98_20660) - 4562817..4563938 (-) 1122 WP_022560205.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53862.52 Da        Isoelectric Point: 8.3425

>NTDB_id=291562 DGM98_RS19695 WP_099802461.1 4558038..4559558(+) (comM) [Xanthomonas citri strain M11]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEITAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAISSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
PGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=291562 DGM98_RS19695 WP_099802461.1 4558038..4559558(+) (comM) [Xanthomonas citri strain M11]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGCGCTGCCCTGC
TGTGCGCACAGTTCGAATTCCCCGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTATGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAGCCGCACGCACGTCGCGCGCTGGAAATCACCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCTGGTTGCGGCAAGACGCTGCTGGCCTCGCGCCTGCCTGGTCTATTGCCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCAGCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCACATCACACCGCCAGCGCCGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CCCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
CGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.126

100

0.561
  comM Haemophilus influenzae Rd KW20

54.795

100

0.553
  comM Glaesserella parasuis strain SC1401

53.649

100

0.538
  comM Vibrio campbellii strain DS40M4

53.557

100

0.536
  comM Legionella pneumophila str. Paris

51.107

98.221

0.502
  comM Legionella pneumophila strain ERS1305867

51.107

98.221

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.453

Multiple sequence alignment