Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DGN02_RS20015 Genome accession   NZ_CP029273
Coordinates   4727368..4728888 (+) Length   506 a.a.
NCBI ID   WP_089111487.1    Uniprot ID   -
Organism   Xanthomonas citri strain T21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4722368..4733888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGN02_RS19995 (DGN02_20770) - 4723239..4723895 (+) 657 WP_007963435.1 RIO1 family regulatory kinase/ATPase -
  DGN02_RS20000 (DGN02_20775) - 4724099..4726084 (-) 1986 WP_099804774.1 beta-N-acetylglucosaminidase domain-containing protein -
  DGN02_RS20005 (DGN02_20785) - 4726545..4726919 (-) 375 WP_199445051.1 P-II family nitrogen regulator -
  DGN02_RS20010 (DGN02_20790) - 4727074..4727352 (+) 279 WP_022560200.1 accessory factor UbiK family protein -
  DGN02_RS20015 (DGN02_20795) comM 4727368..4728888 (+) 1521 WP_089111487.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DGN02_RS20020 (DGN02_20800) - 4729247..4729756 (+) 510 WP_015471471.1 lipocalin family protein -
  DGN02_RS20025 (DGN02_20805) - 4729987..4730163 (-) 177 WP_017158194.1 hypothetical protein -
  DGN02_RS20030 (DGN02_20810) - 4730546..4732108 (+) 1563 WP_099802462.1 EAL domain-containing protein -
  DGN02_RS20035 (DGN02_20815) - 4732174..4733295 (-) 1122 WP_099804775.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53832.49 Da        Isoelectric Point: 8.3425

>NTDB_id=291543 DGN02_RS20015 WP_089111487.1 4727368..4728888(+) (comM) [Xanthomonas citri strain T21]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAISSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLSHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTIARAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
PGEDSASVRARVVAARQRQLARGALPNAQLDQADTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALGAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=291543 DGN02_RS20015 WP_089111487.1 4727368..4728888(+) (comM) [Xanthomonas citri strain T21]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGGCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAGCGCGTGCGCGCTGCCCTGC
TGTGCGCACAGTTCGAATTCCCTGCCCGGCGCATCACCATCAACCTGGCACCGGCTGATCTACCGAAAGAAGGCGGCCGG
TTCGATCTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGTGTCGACGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCCGGGC
GACGGCTGATCGTCCCGCTCGCCAACGGTGCCGAAGCCGCCATCGCCGGGCACGTCGAAGCCTTCACCGCGCGCACCCTG
CTGGACGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCCGCCGCCGAGCTGGCAGTGCAGGCGCTCGGCGCACGCGC
CCTGCCCGATATGGCCGACGTGCGCGGGCAGCCGCACGCACGTCGCGCGCTGGAAATCGCCGCTGCCGGTGGGCACCATC
TGTTGCTGGTCGGCAGCCCTGGTTGCGGCAAGACGCTGCTGGCCTCGCGCCTGCCTGGTCTATTACCCGAAGCCAGCGAA
GCAGAAGCACTGGAAACCGCTGCGATCAGCTCGATCAGCGGCCGTGGGCTGGATCTGGCCCGCTGGCGGCAACGGCCGTA
CCGCGCCCCGCATCACACCGCCAGCGCCGTGGCCCTGGTCGGCGGCGGCACGCATCCGCGCCCCGGCGAGATCTCGCTGT
CTCACAACGGCGTGCTGTTCCTGGACGAATTGCCCGAGTGGCAACGGCAAACCCTGGAAGTGTTGCGCGAGCCCTTGGAG
TCGGGCGTGGTCACGATCGCGCGCGCGGCGCGCAGCGTGGATTTTCCGGCGCGCTTTCAATTGGTCGCCGCCATGAATCC
CTGCCCGTGCGGCTGGGCAGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCACGCCTCCCTCCGCAGGCGCTGCGCAGCGGCAAC
CCCGGTGAAGACAGCGCCAGCGTACGTGCCCGCGTGGTCGCCGCGCGACAACGACAGCTTGCACGCGGCGCGCTGCCCAA
CGCGCAACTGGACCAGGCCGACACCGACCGCCATTGCCGTCTGCAACACGACGATCAGGTGCTGCTGGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTTGCGCGCACCATCGCCGATCTCGACGACAGCGCG
GACATCGCCACACGCCATCTCACCGAAGCGATCGGCTACCGCAAACTGGATCGTGCGCTTGGCGCCGCCAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.324

100

0.563
  comM Haemophilus influenzae Rd KW20

54.99

100

0.555
  comM Glaesserella parasuis strain SC1401

53.846

100

0.54
  comM Vibrio campbellii strain DS40M4

53.755

100

0.538
  comM Legionella pneumophila str. Paris

51.308

98.221

0.504
  comM Legionella pneumophila strain ERS1305867

51.308

98.221

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.455

Multiple sequence alignment