Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DGN21_RS18230 Genome accession   NZ_CP029263
Coordinates   4343206..4344726 (+) Length   506 a.a.
NCBI ID   WP_104543574.1    Uniprot ID   A0AB73H0F9
Organism   Xanthomonas sp. MLO165     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4338206..4349726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGN21_RS18210 (DGN21_18625) - 4338919..4339593 (+) 675 WP_046344826.1 RIO1 family regulatory kinase/ATPase -
  DGN21_RS18215 (DGN21_18630) - 4339947..4341929 (-) 1983 WP_215825014.1 beta-N-acetylglucosaminidase domain-containing protein -
  DGN21_RS18220 (DGN21_18635) - 4342382..4342720 (-) 339 WP_016904463.1 P-II family nitrogen regulator -
  DGN21_RS18225 (DGN21_18640) - 4342912..4343190 (+) 279 WP_039816672.1 accessory factor UbiK family protein -
  DGN21_RS18230 (DGN21_18645) comM 4343206..4344726 (+) 1521 WP_104543574.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DGN21_RS18235 (DGN21_18650) - 4345043..4345552 (+) 510 WP_202397356.1 lipocalin family protein -
  DGN21_RS18240 (DGN21_18665) - 4346201..4346377 (-) 177 WP_046344854.1 hypothetical protein -
  DGN21_RS18245 (DGN21_18670) - 4346761..4348320 (+) 1560 WP_102582067.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53752.37 Da        Isoelectric Point: 7.9616

>NTDB_id=291472 DGN21_RS18230 WP_104543574.1 4343206..4344726(+) (comM) [Xanthomonas sp. MLO165]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQTLADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLVNGAEAAVAGHVEAFTARTL
LEVCAALNGSQRAPAAEVAVPALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPESSE
AEALETAAITSVSGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGD
PGEDSASMRARVVAARQRQLARAGAPNAHLDQAQTDDHCRLEGDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
AIATRHLTEAIGYRKLDRAIGTASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=291472 DGN21_RS18230 WP_104543574.1 4343206..4344726(+) (comM) [Xanthomonas sp. MLO165]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCACCTGAGGTCCGGGTGGAGGTGCATCTCTCCGG
CGGGCTTCCCTCCACCCAGATCGTGGGCCTGCCCGAGGCTGCGGTACGCGAATCGCGCGAACGCGTGCGTGCGGCGCTGC
TGTGCGCACAATTCGAATTTCCCGCCCGGCGCATCACCATCAACCTGGCCCCGGCCGACTTACCGAAGGAAGGCGGCCGC
TTCGACCTGCCGATCGCCCTCGGCATCCTGGCCGCCAGCGGGCAGATCGATCGTCAAACCCTTGCCGACTACGAGTTTCT
CGGCGAGCTGGCGCTGACCGGCGAATTGCGCGGCGTCGATGGCGTGCTGCCGGCCGCCCTGGCTGCCGCGCAGGCCGGGC
GACGGCTGATCGTGCCGCTAGTCAATGGTGCCGAAGCGGCTGTCGCCGGGCACGTCGAGGCCTTCACCGCGCGTACGCTG
CTGGAAGTCTGCGCCGCGCTCAACGGCAGCCAACGGGCGCCCGCTGCCGAAGTAGCGGTTCCGGCGCTCGGCGCGCGCGC
GCTGCCCGACATGGCCGATGTGCGCGGCCAGCCGCACGCGCGTCGCGCGCTGGAGATCGCCGCTGCCGGTGGTCACCATT
TATTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCCTGTTGCCGGAATCCAGCGAG
GCCGAGGCACTGGAAACCGCTGCCATTACCTCGGTCAGCGGCCGCGGGCTGGATCTTGCGCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCGCACCATACCGCCAGCGCGGTCGCATTGGTCGGGGGCGGCACGCATCCGCGCCCGGGCGAGATCTCGCTGG
CCCACAACGGCGTGCTGTTTCTGGACGAATTGCCCGAATGGCAACGGCAGACGCTGGAAGTGTTGCGCGAGCCCCTGGAA
TCCGGCCTGGTGACGATCTCGCGCGCCGCGCGCAGCGTGGATTTCCCGGCACGCTTCCAGCTGGTTGCTGCCATGAACCC
ATGCCCGTGCGGATGGGCCGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTATCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGGATCGACCTGCATGTCGAAGTGCCGCGACTGCCCCCGCAGGCCTTGCGCAGCGGCGAT
CCCGGCGAAGACAGCGCCAGCATGCGTGCCCGCGTGGTCGCCGCACGCCAACGGCAACTCGCGCGTGCCGGCGCACCCAA
CGCTCACCTGGATCAGGCACAGACCGATGACCACTGCCGCCTGGAAGGCGACGATCAGGTGCTGCTGGAACGCGCCATCG
AACACCTGCAGCTCTCCGCACGCTCGATGCATCGCATCCTGCGCGTGGCCCGCACCATTGCCGATCTCGACGACAGTGCG
GCCATTGCCACCCGGCATCTGACCGAGGCCATTGGTTACCGCAAACTGGATCGCGCCATCGGCACGGCGAGCGCGGCGTA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.917

100

0.569
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.308

98.221

0.504
  comM Legionella pneumophila strain ERS1305867

51.308

98.221

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.458

Multiple sequence alignment