Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DG474_RS05805 Genome accession   NZ_CP029257
Coordinates   1181104..1182060 (-) Length   318 a.a.
NCBI ID   WP_255777641.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1176104..1187060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS05785 (DG474_05895) - 1176148..1177371 (-) 1224 WP_000703343.1 cell division peptidoglycan polymerase FtsW -
  DG474_RS05790 (DG474_05900) prsA 1177559..1178500 (-) 942 WP_000728080.1 peptidylprolyl isomerase PrsA -
  DG474_RS05795 (DG474_05905) - 1178568..1179281 (-) 714 WP_255777638.1 O-methyltransferase -
  DG474_RS05800 (DG474_05910) pepF 1179283..1181085 (-) 1803 WP_255777639.1 oligoendopeptidase F Regulator
  DG474_RS05805 (DG474_05915) coiA 1181104..1182060 (-) 957 WP_255777641.1 competence protein CoiA Machinery gene
  DG474_RS05810 (DG474_05920) - 1182136..1183284 (-) 1149 WP_255777642.1 hypothetical protein -
  DG474_RS05815 (DG474_05925) tehB 1183461..1184321 (-) 861 WP_000413062.1 SAM-dependent methyltransferase TehB -
  DG474_RS05820 (DG474_05930) smpB 1184336..1184803 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37811.36 Da        Isoelectric Point: 9.3797

>NTDB_id=291420 DG474_RS05805 WP_255777641.1 1181104..1182060(-) (coiA) [Streptococcus oralis strain CCUG 53468]
MFVARDAKGNLVNALEKDVTKQAYTCPACGGGLRLRQGQRIRTHFAHESLRDCIAIFENESPEHLGNKEALYHWVKKDNQ
VALEYSLPEIQQIADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
FVWELDLKKQVLRLKYLLHQDLRGKLHFQVKEFPYGQGNLLQILRFPYQKQKLPRFAVMQDSTICHYIRQQLYYQTPYWM
KKQEEAYYQGDNLLNHQLDDWYPQVKPIESGDFLQIETDLASYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=291420 DG474_RS05805 WP_255777641.1 1181104..1182060(-) (coiA) [Streptococcus oralis strain CCUG 53468]
ATGTTTGTAGCCAGAGATGCCAAGGGGAATTTGGTGAATGCCCTTGAAAAAGATGTGACCAAGCAAGCTTATACTTGTCC
AGCCTGTGGGGGCGGACTACGATTACGTCAAGGACAGAGAATTCGAACGCATTTCGCCCATGAATCTTTAAGAGATTGCA
TCGCTATATTCGAGAATGAAAGTCCAGAACACTTGGGAAATAAAGAGGCTCTTTATCATTGGGTCAAGAAGGACAATCAG
GTCGCCTTAGAATATAGTCTGCCTGAGATTCAGCAGATAGCAGATGTTCTCGTCAATGAGAAACTAGCTCTGGAGGTTCA
GTGCAGTCCCTTGTCTCAAAAGCTTTTAGGCGATAGAAGTCAAGGATACCGCAGCCAGGGCTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGGTTAACACAACTGCAAAGAGGATTCCTCTATTTTAGTCAAAATATGGGTTTC
TTTGTTTGGGAACTGGATCTCAAAAAGCAAGTTTTGAGACTTAAATACCTTTTACATCAGGACCTACGTGGCAAACTTCA
TTTTCAGGTCAAGGAATTTCCCTATGGCCAAGGAAATCTCTTGCAAATTCTACGATTTCCTTATCAAAAACAAAAACTGC
CTCGTTTTGCAGTTATGCAAGATTCCACTATCTGTCACTACATTCGCCAGCAATTGTACTACCAAACACCTTACTGGATG
AAGAAGCAGGAGGAAGCTTATTATCAAGGAGACAATCTATTAAACCATCAACTGGACGACTGGTATCCTCAAGTCAAGCC
GATAGAGTCAGGTGATTTTTTGCAGATTGAAACGGATTTGGCTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

70.126

100

0.701
  coiA Streptococcus pneumoniae D39

70.126

100

0.701
  coiA Streptococcus pneumoniae R6

70.126

100

0.701
  coiA Streptococcus mitis NCTC 12261

70.126

100

0.701
  coiA Streptococcus pneumoniae TIGR4

69.811

100

0.698
  coiA Lactococcus lactis subsp. cremoris KW2

42.462

100

0.434

Multiple sequence alignment