Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   DG474_RS05800 Genome accession   NZ_CP029257
Coordinates   1179283..1181085 (-) Length   600 a.a.
NCBI ID   WP_255777639.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174283..1186085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS05785 (DG474_05895) - 1176148..1177371 (-) 1224 WP_000703343.1 cell division peptidoglycan polymerase FtsW -
  DG474_RS05790 (DG474_05900) prsA 1177559..1178500 (-) 942 WP_000728080.1 peptidylprolyl isomerase PrsA -
  DG474_RS05795 (DG474_05905) - 1178568..1179281 (-) 714 WP_255777638.1 O-methyltransferase -
  DG474_RS05800 (DG474_05910) pepF 1179283..1181085 (-) 1803 WP_255777639.1 oligoendopeptidase F Regulator
  DG474_RS05805 (DG474_05915) coiA 1181104..1182060 (-) 957 WP_255777641.1 competence protein CoiA Machinery gene
  DG474_RS05810 (DG474_05920) - 1182136..1183284 (-) 1149 WP_255777642.1 hypothetical protein -
  DG474_RS05815 (DG474_05925) tehB 1183461..1184321 (-) 861 WP_000413062.1 SAM-dependent methyltransferase TehB -
  DG474_RS05820 (DG474_05930) smpB 1184336..1184803 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69798.72 Da        Isoelectric Point: 4.6205

>NTDB_id=291419 DG474_RS05800 WP_255777639.1 1179283..1181085(-) (pepF) [Streptococcus oralis strain CCUG 53468]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTASQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGSASETFAILDNADISFPYVLDDEGKEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDNATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=291419 DG474_RS05800 WP_255777639.1 1179283..1181085(-) (pepF) [Streptococcus oralis strain CCUG 53468]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCGTCCCAGTATGAGGGGCATCTCTTGGATAGCGCAGACAGTT
TGCTTGAGATCACAGAATTCTCACTCGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACGCGTGAGGCCAAGTATCAAGAGTACTATGCTAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAACACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGTTCTGCTAGTGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATACGTGCTTGATGA
CGAAGGCAAGGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACATATGAGCAATTCCAACACACTTATGCTAAGACTTTGCAGACAAATGTTAAGGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTAGAACTTCGTTCTAAAATCTTGGGTA
TTTCCGACCTCAAGATGTACGATGTCTACACACCGCTATCTTCAGTAGATTATAGCTTTACCTACGAAGAAGCCTTGAAA
AAGGCAGAAGAAGCCTTGGCGGTCTTGGGTGACGACTACTTGAGCCGTGTCAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTCTATGAAAATCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCAAGCTATACTCGTGAAACT
CAGCCTTATGTTTACGGGGATTATTCTATCTTCTTAGCAGAGATTGCCTCAACGACTAACGAAAATATCTTGACAGAGAA
ATTGTTGGAAGAAGTAGAAGACAATGCGACTCGTTTTGCAATTCTCAATAACTTCCTAGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCTATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAACTCTACGCTGACTTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGCATTCCTCACTTCTACTATAACTACTATGTTTATCAGTATTCAACTGGTTTTGCAGCTGCTTCAGCCTTAGCTG
AAAAGATTGTCCATGGTAGTCAAGAAGATCGTGACCGCTATATCGACTACCTCAAGGCTGGTAAGTCTGACTATCCGCTC
AATGTCATGAGAAAAGCGGGTGTTGATATGGAGAAGGAAGACTATCTTAACGATGCCTTTGCAGTCTTTGAACGTCGCTT
AAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668

Multiple sequence alignment