Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DEH84_RS13635 Genome accession   NZ_CP029210
Coordinates   3038215..3039759 (-) Length   514 a.a.
NCBI ID   WP_109037345.1    Uniprot ID   A0A2U8FTI8
Organism   Aquabacterium olei strain NBRC 110486     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3033215..3044759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH84_RS13610 (DEH84_13610) rpsA 3033826..3035511 (+) 1686 WP_109037342.1 30S ribosomal protein S1 -
  DEH84_RS13615 (DEH84_13615) - 3035669..3035998 (+) 330 WP_109037343.1 integration host factor subunit beta -
  DEH84_RS13620 (DEH84_13620) - 3036006..3036371 (+) 366 WP_342755622.1 LapA family protein -
  DEH84_RS13625 (DEH84_13625) lapB 3036431..3037588 (+) 1158 WP_109037344.1 lipopolysaccharide assembly protein LapB -
  DEH84_RS13630 (DEH84_13630) - 3037582..3038091 (-) 510 WP_109038397.1 copper chaperone PCu(A)C -
  DEH84_RS13635 (DEH84_13635) comM 3038215..3039759 (-) 1545 WP_109037345.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DEH84_RS13640 (DEH84_13640) - 3040048..3040386 (+) 339 WP_109037346.1 P-II family nitrogen regulator -
  DEH84_RS13645 (DEH84_13645) amt 3040455..3041993 (+) 1539 WP_109037347.1 ammonium transporter -
  DEH84_RS13650 (DEH84_13650) gshA 3042147..3043442 (+) 1296 WP_109037348.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54460.76 Da        Isoelectric Point: 8.0624

>NTDB_id=291242 DEH84_RS13635 WP_109037345.1 3038215..3039759(-) (comM) [Aquabacterium olei strain NBRC 110486]
MSLALVRSRALDGLRAPEITVEVHLANGLPAFTLVGLADTEVKEARERVRAALANCGLDFPFNKRITVNLAPADLPKESG
RFDLPIAIGILTAMGQLDAERVAAFEFAGELSLGGELRPVRGALPMALALHRAALQAGERPPRALVLPASSAREAALVNG
APLYGAAHLMDVVNALRVEGAEPGGLVRMVTEGGLAPSAIGQPDLRDVKGQSAAKRALEVAAAGRHSLLMVGPPGTGKSM
LAQRFPGLLPPLDQDEALESAAVLSLAGHFDPSRWMQRVMRSPHHSASAVAMVGGGSPPRPGEISLAHHGLLFLDELPEF
PRAALEALREPLETGHITISRAVRRHDFPARFQLLAAMNPCPCGHFGNPLKSCRCTPEQVTRYQSRLSGPLLDRIDVQVD
VPMVAPEVLARSPDGESTAEVAERVAAARARQLGRQGVLNASLEGAALTEHARVHADAMAFLQTACGRLGWSGRAFHRVL
RLARTIADLGGAADVLTAHVAEAIQYRRVLQVAS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=291242 DEH84_RS13635 WP_109037345.1 3038215..3039759(-) (comM) [Aquabacterium olei strain NBRC 110486]
ATGTCGCTTGCCTTGGTCCGTAGCCGCGCCCTGGATGGGTTGCGCGCACCTGAAATCACCGTCGAGGTGCATCTGGCCAA
CGGGCTGCCGGCTTTCACGCTGGTCGGCCTGGCAGACACGGAGGTCAAGGAGGCCCGAGAACGGGTGCGTGCCGCGCTGG
CCAACTGCGGGCTGGATTTCCCCTTCAACAAGCGCATCACGGTCAACCTCGCGCCGGCCGACCTGCCCAAGGAGTCGGGG
CGTTTCGACCTGCCCATCGCCATCGGCATCCTGACCGCCATGGGGCAGCTGGATGCCGAGCGCGTGGCCGCGTTCGAGTT
CGCCGGCGAGTTGTCGCTGGGCGGTGAACTGCGGCCCGTGCGCGGCGCGCTGCCCATGGCGCTGGCCCTGCACCGCGCGG
CCTTGCAGGCCGGTGAGCGGCCACCACGCGCGCTGGTCCTGCCCGCCTCGAGTGCCCGCGAGGCGGCGCTGGTGAACGGT
GCCCCGCTGTATGGGGCGGCCCATCTGATGGACGTCGTCAACGCCTTGCGCGTGGAGGGGGCCGAGCCGGGCGGTCTGGT
TCGCATGGTGACCGAGGGCGGCTTGGCCCCTTCCGCCATCGGGCAGCCCGATCTGCGCGACGTCAAGGGCCAGAGCGCCG
CCAAGCGCGCGCTGGAGGTGGCGGCGGCGGGGCGCCATTCGCTCTTGATGGTTGGCCCACCCGGCACAGGCAAGTCCATG
CTGGCGCAGCGTTTTCCGGGCTTGCTGCCGCCGCTGGATCAGGATGAGGCGCTGGAGTCGGCGGCGGTGCTGAGCCTGGC
GGGCCATTTCGATCCATCACGCTGGATGCAGCGTGTGATGCGCAGCCCGCACCACAGCGCGTCGGCCGTCGCCATGGTCG
GAGGCGGATCCCCGCCGCGGCCGGGGGAGATCTCGCTGGCCCACCACGGGCTGCTGTTTCTCGATGAACTGCCGGAGTTT
CCGCGGGCGGCGCTCGAGGCGCTGCGCGAGCCCCTGGAGACCGGGCACATCACGATCTCGCGCGCCGTGCGGCGGCACGA
CTTCCCGGCGCGCTTTCAGCTGTTGGCCGCCATGAACCCCTGTCCTTGCGGGCACTTCGGCAACCCGCTGAAGAGCTGCC
GGTGCACGCCCGAACAGGTCACGCGATACCAGTCCCGGCTGAGCGGGCCGCTGCTCGACCGCATCGACGTGCAGGTGGAC
GTGCCCATGGTGGCGCCGGAGGTGCTGGCCCGCAGTCCGGACGGCGAAAGCACGGCCGAAGTGGCCGAGCGGGTGGCCGC
CGCCCGGGCGCGCCAGCTCGGCCGGCAGGGCGTGCTCAATGCCAGCCTGGAAGGGGCCGCCCTGACCGAGCACGCCCGCG
TGCACGCCGACGCCATGGCCTTTCTGCAGACGGCTTGCGGGCGCCTGGGCTGGTCCGGCCGGGCTTTCCACCGTGTGCTG
CGGCTGGCACGCACGATCGCCGACCTCGGTGGCGCGGCCGACGTGCTCACCGCCCATGTGGCCGAGGCGATTCAGTACCG
GCGCGTGCTGCAGGTCGCTTCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(415-507)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8FTI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

50.096

100

0.506
  comM Glaesserella parasuis strain SC1401

48.936

100

0.492
  comM Vibrio cholerae strain A1552

49.412

99.222

0.49
  comM Vibrio campbellii strain DS40M4

49.216

99.222

0.488
  comM Legionella pneumophila str. Paris

44.381

100

0.453
  comM Legionella pneumophila strain ERS1305867

44.381

100

0.453
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.136

100

0.422

Multiple sequence alignment