Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKO_RS16420 Genome accession   NC_009792
Coordinates   3570352..3570888 (-) Length   178 a.a.
NCBI ID   WP_012134613.1    Uniprot ID   A8AN55
Organism   Citrobacter koseri ATCC BAA-895     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3565352..3575888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKO_RS16410 (CKO_03839) - 3566093..3568801 (+) 2709 WP_012134610.1 cation-transporting P-type ATPase -
  CKO_RS23380 - 3569030..3569200 (+) 171 WP_155116396.1 hypothetical protein -
  CKO_RS16415 (CKO_03841) - 3569660..3570091 (-) 432 WP_012134612.1 universal stress protein -
  CKO_RS16420 (CKO_03842) ssb 3570352..3570888 (-) 537 WP_012134613.1 single-stranded DNA-binding protein SSB1 Machinery gene
  CKO_RS16430 (CKO_03843) uvrA 3571139..3573961 (+) 2823 WP_012134614.1 excinuclease ABC subunit UvrA -
  CKO_RS16435 (CKO_03844) - 3574057..3574413 (-) 357 WP_012134615.1 MmcQ/YjbR family DNA-binding protein -
  CKO_RS16440 (CKO_03845) aphA 3574616..3575329 (-) 714 WP_012134616.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19138.19 Da        Isoelectric Point: 5.2358

>NTDB_id=29121 CKO_RS16420 WP_012134613.1 3570352..3570888(-) (ssb) [Citrobacter koseri ATCC BAA-895]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGVPAGGNMGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQS
APAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=29121 CKO_RS16420 WP_012134613.1 3570352..3570888(-) (ssb) [Citrobacter koseri ATCC BAA-895]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAGCAGACCGGTGAGATGAAAGAGCAGACGG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAGTCCGGTCAGGACAAATACACCACTGAAGTGGTGGTTAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGTTCCGGCTGGCGGCAATATGGGCGGCGGTCAGCAGCAGG
GCGGTTGGGGTCAGCCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAACAATCC
GCTCCGGCACCGTCTAACGAACCGCCAATGGATTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AN55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria gonorrhoeae MS11

45.556

100

0.461
  ssb Neisseria meningitidis MC58

44.262

100

0.455
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.667

100

0.371

Multiple sequence alignment