Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   DEH83_RS01340 Genome accession   NZ_CP029207
Coordinates   277817..278779 (-) Length   320 a.a.
NCBI ID   WP_255776884.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 272817..283779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS01320 (DEH83_01295) - 273559..274128 (-) 570 WP_080749299.1 LURP-one-related/scramblase family protein -
  DEH83_RS01325 (DEH83_01305) prsA 274266..275204 (-) 939 WP_003069861.1 peptidylprolyl isomerase PrsA -
  DEH83_RS01330 (DEH83_01310) - 275311..275994 (-) 684 WP_255776883.1 O-methyltransferase -
  DEH83_RS01335 (DEH83_01315) pepF 275995..277797 (-) 1803 WP_048800444.1 oligoendopeptidase F Regulator
  DEH83_RS01340 (DEH83_01320) coiA 277817..278779 (-) 963 WP_255776884.1 competence protein CoiA Machinery gene
  DEH83_RS01345 (DEH83_01325) celB 278868..279158 (-) 291 Protein_266 PTS cellobiose transporter subunit IIC -
  DEH83_RS01350 (DEH83_01330) - 279158..280144 (-) 987 Protein_267 6-phospho-beta-glucosidase -
  DEH83_RS01355 (DEH83_01335) - 280440..281609 (-) 1170 WP_255776886.1 MFS transporter -
  DEH83_RS01360 (DEH83_01340) - 281690..283051 (-) 1362 WP_134970999.1 DUF1958 domain-containing protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37933.67 Da        Isoelectric Point: 8.9930

>NTDB_id=291155 DEH83_RS01340 WP_255776884.1 277817..278779(-) (coiA) [Streptococcus constellatus strain TCV107]
MLIACQENGKLLNAVEDTVNTLNRFLCPACLEAVRFKKGRVMRPHFAHISLKDCHFYTENESAEHLNLKAALFTWARKSN
HAVQVEAYLPKLQQIADLLVEKQIALEVQCSSLSQKRLKERTDSYHQHGYHVLWLLGKRLWLKDSLTNLQKDFLYFSQNM
GFYLWELDDKKQELRLKYLIHEDLHGRAQYKVQSFPFGQGSLLTVLRTPFQQQEMTSFLAKEDKNICRYVRQQLYYQQPK
WMKLQAELYQAGDNLLTKTTSDFYPQVQPVRASSFCQIFQDLTPYYQQFSAYYEKEKNKNFQILYPPAFYTRILSVFMIE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=291155 DEH83_RS01340 WP_255776884.1 277817..278779(-) (coiA) [Streptococcus constellatus strain TCV107]
ATGCTAATAGCTTGTCAGGAAAATGGAAAACTACTAAATGCTGTGGAAGATACGGTAAATACGCTGAATAGATTTCTTTG
TCCAGCTTGTTTGGAGGCGGTCCGTTTTAAAAAAGGAAGAGTCATGCGACCGCATTTTGCTCATATTTCTTTAAAAGACT
GTCATTTTTATACGGAAAATGAAAGCGCAGAACACCTGAATTTGAAAGCTGCCTTGTTTACTTGGGCCAGAAAGTCTAAT
CATGCAGTTCAAGTGGAAGCGTATTTACCTAAATTGCAACAAATTGCAGATCTGTTAGTAGAGAAACAGATTGCGCTTGA
AGTTCAATGCAGTTCGCTGAGTCAAAAGCGCTTAAAAGAGCGTACGGACAGTTATCATCAGCACGGTTATCATGTTCTTT
GGCTATTAGGAAAGAGACTTTGGCTGAAAGATTCTTTAACTAATTTACAAAAAGATTTTCTTTATTTCAGTCAAAATATG
GGCTTTTATCTGTGGGAATTGGATGATAAAAAGCAGGAGCTTCGGCTCAAGTATCTGATTCACGAAGATTTGCATGGCCG
AGCTCAATATAAGGTCCAGTCTTTTCCTTTTGGTCAGGGTAGCCTTTTGACTGTTCTGCGAACGCCCTTTCAACAGCAGG
AGATGACCAGTTTTCTAGCAAAAGAGGATAAAAATATTTGCCGTTATGTTCGTCAACAACTCTATTATCAACAACCTAAA
TGGATGAAATTACAGGCAGAATTGTATCAAGCGGGTGATAATTTATTGACTAAAACGACTAGTGATTTTTATCCGCAGGT
TCAGCCTGTTCGTGCCAGCTCTTTTTGTCAGATTTTTCAAGACCTCACGCCTTATTACCAACAATTTTCAGCTTATTATG
AAAAGGAAAAGAATAAAAATTTCCAAATTCTCTATCCTCCAGCTTTTTATACAAGGATTTTATCAGTATTTATGATAGAA
TAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(2-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.125

100

0.531
  coiA Streptococcus pneumoniae TIGR4

52.812

100

0.528
  coiA Streptococcus pneumoniae Rx1

52.812

100

0.528
  coiA Streptococcus pneumoniae D39

52.812

100

0.528
  coiA Streptococcus pneumoniae R6

52.812

100

0.528
  coiA Lactococcus lactis subsp. cremoris KW2

43.519

100

0.441

Multiple sequence alignment