Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CKO_RS00480 Genome accession   NC_009792
Coordinates   100435..101955 (-) Length   506 a.a.
NCBI ID   WP_012131116.1    Uniprot ID   A8ACR6
Organism   Citrobacter koseri ATCC BAA-895     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 95435..106955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKO_RS00470 (CKO_00103) hdfR 99118..99963 (-) 846 WP_012131114.1 HTH-type transcriptional regulator HdfR -
  CKO_RS00475 (CKO_00104) maoP 100070..100408 (+) 339 WP_012131115.1 macrodomain Ori organization protein MaoP -
  CKO_RS00480 (CKO_00105) comM 100435..101955 (-) 1521 WP_012131116.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CKO_RS00485 ilvL 102307..102405 (+) 99 WP_001311244.1 ilv operon leader peptide -
  CKO_RS00490 (CKO_00107) ilvG 102546..104192 (+) 1647 WP_012131118.1 acetolactate synthase 2 catalytic subunit -
  CKO_RS00495 (CKO_00108) ilvM 104189..104452 (+) 264 WP_012131119.1 acetolactate synthase 2 small subunit -
  CKO_RS00500 (CKO_00109) ilvE 104470..105399 (+) 930 WP_012131120.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54971.06 Da        Isoelectric Point: 7.4364

>NTDB_id=29110 CKO_RS00480 WP_012131116.1 100435..101955(-) (comM) [Citrobacter koseri ATCC BAA-895]
MSLSIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTTNKLNEYELVGELALTGALRGVPGAISSATEAIRAGRHIIVAKENATEVGLISGEGCLIADHL
QTVCAFLEGKLDLEKPVSTDSDACLLHDDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPSLSDK
EALESAAILSLVNADTVQRQWKRRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCSPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQAAVKG
EDSATVKVRVISARKRQYERQGKLNAHLDSQGIRKYCSLHSDDAHWLEETLIHLGLSIRAWQRLLKVARTIADLEQTENI
TRLHLQEAVGYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=29110 CKO_RS00480 WP_012131116.1 100435..101955(-) (comM) [Citrobacter koseri ATCC BAA-895]
ATGTCACTGTCGATTGTTCACACACGCGCCGCACTTGGCGTTAATGCGCCCCCAATAACCATCGAGGTGCATATCAGTAA
TGGCCTGCCGGGTTTAACAATGGTTGGGCTACCTGAAACGACGGTAAAGGAGGCCCGGGATCGGGTTCGCAGCGCAATCA
TCAATAGCGGGTATGAATTTCCGGCGAAGAAAATCACCATTAATCTGGCCCCGGCAGATTTACCCAAAGAGGGCGGAAGA
TATGATTTACCTATCGCAATTGCGCTTCTGGCGGCGTCAGAGCAACTTACAACAAATAAGCTTAATGAATATGAACTGGT
GGGCGAACTGGCCCTTACAGGTGCGTTACGTGGCGTTCCAGGCGCGATATCCAGTGCAACCGAGGCAATTCGGGCAGGCA
GACATATCATTGTTGCAAAAGAGAATGCAACAGAAGTTGGGCTAATCAGCGGAGAGGGATGCCTGATTGCAGATCATCTG
CAAACGGTATGCGCATTTCTGGAAGGGAAACTGGATCTTGAGAAACCAGTCTCTACCGATTCTGACGCCTGTTTACTGCA
TGACGATCTCAGTGATGTTATCGGTCAGGAACAGGGGAAACGAGGCCTGGAAATCACGGCCGCAGGAGGGCACAACCTGC
TGCTGATAGGCCCGCCAGGTACGGGAAAAACCATGCTGGCCAGCCGCATTAATGGGCTACTGCCATCATTAAGTGACAAA
GAAGCGCTGGAAAGCGCGGCGATTCTCAGCCTGGTGAACGCCGATACGGTACAAAGGCAGTGGAAACGGCGTCCTTTCCG
CTCACCTCATCACAGCGCATCATTAACGGCAATGGTGGGGGGAGGTTCAATACCCGCGCCAGGAGAAATATCGCTGGCGC
ACAACGGTATTTTGTTTCTGGATGAACTGCCTGAGTTTGAGCGACGCACGCTGGATGCGCTGCGTGAACCTATTGAGTCT
GGTCAGATACACCTTTCGCGCACCCGGGCAAAGATCACCTATCCTGCGCGCTTCCAACTGATTGCAGCAATGAATCCCAG
TCCGACCGGTCACTATCAGGGGAACCATAATCGCTGTAGCCCGGAACAGACGTTGCGCTACCTCAGCCGTTTATCCGGCC
CCTTTCTCGATCGATTCGATCTCTCGCTCGAAATTCCCCTGCCACCACCCGGTATACTCAGTCAGGCAGCGGTTAAAGGC
GAGGACAGCGCTACAGTGAAAGTACGGGTGATATCCGCACGGAAACGCCAGTACGAACGACAGGGGAAGCTAAACGCCCA
TCTGGACAGCCAGGGTATACGAAAATACTGCTCTCTACACAGTGATGATGCGCACTGGCTGGAGGAGACGCTGATACATC
TGGGATTGTCTATACGAGCCTGGCAGCGCTTACTGAAGGTTGCCCGTACCATTGCCGATCTGGAACAAACGGAGAATATT
ACGCGCCTGCATTTGCAGGAGGCTGTGGGCTATCGGGCAATAGACAGACTACTGATTCATTTACAAAAACTACTGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8ACR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.743

100

0.591
  comM Glaesserella parasuis strain SC1401

58.974

100

0.591
  comM Vibrio cholerae strain A1552

59.363

99.209

0.589
  comM Vibrio campbellii strain DS40M4

58.367

99.209

0.579
  comM Legionella pneumophila str. Paris

47.4

98.814

0.468
  comM Legionella pneumophila strain ERS1305867

47.4

98.814

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.936

99.407

0.437

Multiple sequence alignment