Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE/cglE   Type   Machinery gene
Locus tag   SGO_RS09400 Genome accession   NC_009785
Coordinates   1989779..1990072 (-) Length   97 a.a.
NCBI ID   WP_012130938.1    Uniprot ID   -
Organism   Streptococcus gordonii str. Challis substr. CH1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1984779..1995072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGO_RS09370 (SGO_1914) folP 1984966..1985931 (-) 966 WP_012130932.1 dihydropteroate synthase -
  SGO_RS09375 (SGO_1915) - 1986009..1986674 (-) 666 WP_012130933.1 CPBP family intramembrane glutamic endopeptidase -
  SGO_RS09380 (SGO_1916) - 1986722..1987912 (-) 1191 WP_012130934.1 acetate kinase -
  SGO_RS09385 (SGO_1917) comYH 1987962..1988915 (-) 954 WP_012130935.1 class I SAM-dependent methyltransferase Machinery gene
  SGO_RS09390 (SGO_1918) comGG 1988946..1989377 (-) 432 WP_223341947.1 competence type IV pilus minor pilin ComGG -
  SGO_RS09395 (SGO_1919) comGF/cglF 1989358..1989795 (-) 438 WP_012130937.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGO_RS09400 (SGO_1920) comGE/cglE 1989779..1990072 (-) 294 WP_012130938.1 competence type IV pilus minor pilin ComGE Machinery gene
  SGO_RS09405 (SGO_1921) comYD 1990044..1990472 (-) 429 WP_012130939.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGO_RS09410 (SGO_1922) comYC 1990432..1990749 (-) 318 WP_012130940.1 competence type IV pilus major pilin ComGC Machinery gene
  SGO_RS09415 (SGO_1923) comYB 1990746..1991780 (-) 1035 WP_012130941.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGO_RS09420 (SGO_1924) comYA 1991692..1992651 (-) 960 WP_012130942.1 competence type IV pilus ATPase ComGA Machinery gene
  SGO_RS09425 (SGO_1925) - 1992753..1993121 (-) 369 WP_012130943.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10897.82 Da        Isoelectric Point: 10.0884

>NTDB_id=29103 SGO_RS09400 WP_012130938.1 1989779..1990072(-) (comGE/cglE) [Streptococcus gordonii str. Challis substr. CH1]
MANLRKRQIKGTILLEALLALGVFAVIASLLLGQITQSRKEAAVILQKEEVLQVAQMALQTGQDHLSLNGIEIRIQRTKD
QIRVFHQGEELIDVEKR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=29103 SGO_RS09400 WP_012130938.1 1989779..1990072(-) (comGE/cglE) [Streptococcus gordonii str. Challis substr. CH1]
ATGGCAAATTTAAGAAAACGACAAATTAAAGGGACTATTTTACTGGAAGCCTTACTAGCTTTGGGAGTTTTTGCTGTAAT
TGCAAGTTTGCTACTAGGTCAAATCACGCAATCACGCAAAGAAGCAGCTGTCATTTTACAAAAAGAAGAGGTCCTGCAGG
TGGCCCAAATGGCCCTCCAAACAGGGCAGGACCATCTTTCCTTAAATGGCATTGAAATTCGGATTCAGAGAACAAAGGAT
CAGATTCGAGTATTCCATCAGGGGGAGGAATTGATTGATGTTGAAAAAAGGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE/cglE Streptococcus pneumoniae Rx1

53.763

95.876

0.515
  comGE/cglE Streptococcus pneumoniae D39

53.763

95.876

0.515
  comGE/cglE Streptococcus pneumoniae R6

53.763

95.876

0.515
  comGE/cglE Streptococcus pneumoniae TIGR4

53.763

95.876

0.515
  comGE/cglE Streptococcus mitis NCTC 12261

51.613

95.876

0.495
  comGE/cglE Streptococcus mitis SK321

51.613

95.876

0.495
  comYE Streptococcus mutans UA140

42.268

100

0.423
  comYE Streptococcus mutans UA159

42.268

100

0.423

Multiple sequence alignment