Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECS88_RS26115 Genome accession   NC_011742
Coordinates   4853149..4853625 (+) Length   158 a.a.
NCBI ID   WP_001186789.1    Uniprot ID   -
Organism   Escherichia coli S88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4848149..4858625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECS88_RS26085 (ECS88_4891) - 4848270..4851116 (+) 2847 WP_000820566.1 Ag43/Cah family autotransporter adhesin -
  ECS88_RS26090 (ECS88_4892) - 4851187..4851382 (+) 196 Protein_4662 DUF905 family protein -
  ECS88_RS26100 (ECS88_4893) - 4851500..4852318 (+) 819 WP_001234651.1 DUF932 domain-containing protein -
  ECS88_RS26110 - 4852660..4853133 (+) 474 WP_001411480.1 antirestriction protein -
  ECS88_RS26115 (ECS88_4895) radC 4853149..4853625 (+) 477 WP_001186789.1 RadC family protein Machinery gene
  ECS88_RS26120 (ECS88_4896) - 4853688..4853909 (+) 222 WP_000692333.1 DUF987 domain-containing protein -
  ECS88_RS26125 (ECS88_4898) istB 4854113..4854859 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  ECS88_RS26130 (ECS88_4899) istA 4854874..4856415 (-) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  ECS88_RS26135 (ECS88_4900) - 4856658..4857026 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECS88_RS26140 - 4857116..4857214 (+) 99 Protein_4670 TA system toxin CbtA family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17672.29 Da        Isoelectric Point: 7.5717

>NTDB_id=29103 ECS88_RS26115 WP_001186789.1 4853149..4853625(+) (radC) [Escherichia coli S88]
MQQLSFLPGNMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=29103 ECS88_RS26115 WP_001186789.1 4853149..4853625(+) (radC) [Escherichia coli S88]
ATGCAACAGCTTTCCTTTCTGCCCGGAAACATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment