Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DR788_RS21340 Genome accession   NZ_CP034792
Coordinates   4159102..4159638 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain 2009C-3378     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4154102..4164638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR788_RS21320 soxR 4155831..4156295 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  DR788_RS21325 soxS 4156381..4156704 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  DR788_RS21330 pdeC 4156707..4158293 (-) 1587 WP_001016522.1 c-di-GMP phosphodiesterase PdeC -
  DR788_RS21335 yjcB 4158722..4159003 (+) 282 WP_001295689.1 YjcB family protein -
  DR788_RS21340 ssb 4159102..4159638 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  DR788_RS21345 uvrA 4159893..4162715 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  DR788_RS21350 yjbR 4162750..4163106 (-) 357 WP_000155652.1 MmcQ/YjbR family DNA-binding protein -
  DR788_RS21355 yjbQ 4163110..4163526 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DR788_RS21360 aphA 4163637..4164350 (-) 714 WP_001226923.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=290853 DR788_RS21340 WP_000168305.1 4159102..4159638(-) (ssb) [Escherichia coli strain 2009C-3378]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=290853 DR788_RS21340 WP_000168305.1 4159102..4159638(-) (ssb) [Escherichia coli strain 2009C-3378]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489