Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DDV95_RS19695 Genome accession   NZ_CP029164
Coordinates   3818856..3819485 (-) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   A0A8S7S1H1
Organism   Escherichia coli strain 104     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3813856..3824485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV95_RS19680 (DDV95_19680) helD 3814098..3816152 (-) 2055 WP_001317751.1 DNA helicase IV -
  DDV95_RS19685 (DDV95_19685) yccF 3816275..3816721 (+) 447 WP_001261236.1 YccF domain-containing protein -
  DDV95_RS19690 (DDV95_19690) yccS 3816731..3818893 (+) 2163 WP_000875041.1 YccS family putative transporter -
  DDV95_RS19695 (DDV95_19695) sxy/tfoX 3818856..3819485 (-) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DDV95_RS19700 (DDV95_19700) sulA 3819704..3820213 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  DDV95_RS19710 (DDV95_19710) ompA 3820570..3821610 (+) 1041 WP_001314606.1 porin OmpA -
  DDV95_RS19715 (DDV95_19715) matP 3821686..3822138 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DDV95_RS19720 (DDV95_19720) ycbZ 3822324..3824084 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=290854 DDV95_RS19695 WP_000699018.1 3818856..3819485(-) (sxy/tfoX) [Escherichia coli strain 104]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=290854 DDV95_RS19695 WP_000699018.1 3818856..3819485(-) (sxy/tfoX) [Escherichia coli strain 104]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment