Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CRG85_RS05375 Genome accession   NZ_CP034787
Coordinates   1105303..1105818 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ECCNB20-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100303..1110818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRG85_RS05330 (CRG85_05330) csrA 1100890..1101075 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CRG85_RS05360 (CRG85_05360) yqaB 1102533..1103099 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CRG85_RS05365 (CRG85_05365) yqaA 1103096..1103524 (+) 429 WP_001287454.1 YqaA family protein -
  CRG85_RS05370 (CRG85_05370) gshA 1103597..1105153 (+) 1557 WP_077491682.1 glutamate--cysteine ligase -
  CRG85_RS05375 (CRG85_05375) luxS 1105303..1105818 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CRG85_RS05380 (CRG85_05380) emrB 1105882..1107420 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CRG85_RS05385 (CRG85_05385) emrA 1107437..1108609 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CRG85_RS05390 (CRG85_05390) emrR 1108736..1109266 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CRG85_RS05395 (CRG85_05395) ygaH 1109357..1109692 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CRG85_RS05400 (CRG85_05400) ygaZ 1109682..1110419 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=290747 CRG85_RS05375 WP_001130211.1 1105303..1105818(+) (luxS) [Escherichia coli strain ECCNB20-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=290747 CRG85_RS05375 WP_001130211.1 1105303..1105818(+) (luxS) [Escherichia coli strain ECCNB20-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment