Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | C3363_RS00925 | Genome accession | NZ_CP029150 |
| Coordinates | 180559..181011 (+) | Length | 150 a.a. |
| NCBI ID | WP_010787008.1 | Uniprot ID | B8F829 |
| Organism | Glaesserella parasuis strain GZ20170512 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 175559..186011
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3363_RS00905 (C3363_00925) | - | 175868..177322 (-) | 1455 | WP_010787012.1 | aminoacyl-histidine dipeptidase | - |
| C3363_RS00910 (C3363_00930) | gpt | 177503..177982 (+) | 480 | WP_010787011.1 | xanthine phosphoribosyltransferase | - |
| C3363_RS00915 (C3363_00935) | gmk | 178316..178942 (+) | 627 | WP_010787010.1 | guanylate kinase | - |
| C3363_RS00920 (C3363_00940) | radA | 178995..180371 (-) | 1377 | WP_010787009.1 | DNA repair protein RadA | - |
| C3363_RS00925 (C3363_00945) | pilA | 180559..181011 (+) | 453 | WP_010787008.1 | pilin | Machinery gene |
| C3363_RS00930 (C3363_00950) | - | 181284..181649 (+) | 366 | WP_015940027.1 | endonuclease domain-containing protein | - |
| C3363_RS00935 (C3363_00955) | pilB | 182002..183387 (+) | 1386 | WP_010787006.1 | GspE/PulE family protein | Machinery gene |
| C3363_RS00940 (C3363_00960) | pilC | 183380..184576 (+) | 1197 | WP_005711777.1 | type II secretion system F family protein | Machinery gene |
| C3363_RS00945 (C3363_00965) | - | 184573..185241 (+) | 669 | WP_010787005.1 | prepilin peptidase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 16138.74 Da Isoelectric Point: 9.0811
>NTDB_id=290747 C3363_RS00925 WP_010787008.1 180559..181011(+) (pilA) [Glaesserella parasuis strain GZ20170512]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPENFCRQ
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPENFCRQ
Nucleotide
Download Length: 453 bp
>NTDB_id=290747 C3363_RS00925 WP_010787008.1 180559..181011(+) (pilA) [Glaesserella parasuis strain GZ20170512]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCGAAATACCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACTCCGAAATTCGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGAGAATTTCTGTAGGCAATAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCGAAATACCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACTCCGAAATTCGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGAGAATTTCTGTAGGCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
98.667 |
100 |
0.987 |
| pilA | Haemophilus influenzae Rd KW20 |
54.054 |
98.667 |
0.533 |
| pilA | Haemophilus influenzae 86-028NP |
53.378 |
98.667 |
0.527 |