Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C3363_RS00385 Genome accession   NZ_CP029150
Coordinates   77923..79050 (-) Length   375 a.a.
NCBI ID   WP_010787338.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GZ20170512     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 72923..84050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3363_RS00360 (C3363_00380) - 73958..74647 (-) 690 WP_159180028.1 ESPR-type extended signal peptide-containing protein -
  C3363_RS00370 (C3363_00390) - 75260..76048 (-) 789 WP_010787335.1 heme ABC transporter ATP-binding protein -
  C3363_RS00375 (C3363_00395) - 76048..77034 (-) 987 WP_010787336.1 FecCD family ABC transporter permease -
  C3363_RS00380 (C3363_00400) - 77034..77870 (-) 837 WP_010787337.1 heme/hemin ABC transporter substrate-binding protein -
  C3363_RS00385 (C3363_00405) dprA 77923..79050 (-) 1128 WP_010787338.1 DNA-processing protein DprA Machinery gene
  C3363_RS00390 (C3363_00410) def 79385..79897 (+) 513 WP_010787339.1 peptide deformylase -
  C3363_RS00395 (C3363_00415) rfaD 79909..80835 (+) 927 WP_021110191.1 ADP-glyceromanno-heptose 6-epimerase -
  C3363_RS11355 - 80927..81070 (+) 144 WP_010787341.1 hypothetical protein -
  C3363_RS00400 (C3363_00420) - 81051..81335 (+) 285 WP_159179775.1 hypothetical protein -
  C3363_RS00405 - 82137..82286 (-) 150 WP_159179776.1 hypothetical protein -
  C3363_RS00410 (C3363_00430) - 82516..82911 (-) 396 WP_016527749.1 helix-turn-helix domain-containing protein -
  C3363_RS00415 (C3363_00435) - 82939..83208 (-) 270 WP_010787344.1 type II toxin-antitoxin system RelE family toxin -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 41781.83 Da        Isoelectric Point: 5.4085

>NTDB_id=290746 C3363_RS00385 WP_010787338.1 77923..79050(-) (dprA) [Glaesserella parasuis strain GZ20170512]
MTHLTKLLALLQVPQLGAQRIGRLLSEVDFGEFCQYDKTALKQMGWNERQIQRWFNPEHKWIDQALQWAEQDQQRILTLF
DEDYPFLLKQISTAPPVLFVRGNVESLSLPQIAIVGSRDYSHYGEHWAGHFSAELVKHQLAVTSGLAIGIDGFCHQRAVN
ENGITIAVLGSGLDQVYPARHKKLAEQIVDTSGALVSEFFPSQPPIAENFPRRNRIISGLSLGTLVIEATVNSGSLITAR
YALEQGREVFALPNAVQNPYSEGCHKLIKEGALLVENIDDILEAIVWQRQSVHIQPSLFDTKPKQAVKSEPKFAKNLPEL
TACQQQLFEQISLEPISIDDLAKATDMAVETALIELLNLELLGVVKQVSGGYVIT

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=290746 C3363_RS00385 WP_010787338.1 77923..79050(-) (dprA) [Glaesserella parasuis strain GZ20170512]
ATGACACATCTCACAAAATTATTAGCCCTGTTACAAGTGCCACAGCTTGGCGCGCAACGTATCGGGCGGTTACTCTCGGA
AGTGGACTTTGGCGAATTTTGTCAATATGACAAAACCGCATTAAAGCAAATGGGCTGGAATGAACGGCAAATTCAGCGTT
GGTTTAATCCTGAGCATAAATGGATCGATCAGGCATTGCAATGGGCGGAACAGGATCAGCAACGGATTTTAACTTTATTT
GACGAAGATTATCCTTTTTTACTGAAGCAGATCAGCACCGCTCCTCCAGTGCTTTTTGTGCGGGGGAATGTTGAAAGTTT
ATCGTTACCGCAGATAGCCATCGTTGGCAGTCGAGATTATTCCCACTATGGTGAACACTGGGCAGGGCATTTTTCGGCGG
AATTAGTGAAACATCAGCTTGCTGTCACCAGTGGCTTAGCCATAGGCATAGATGGATTTTGCCATCAACGTGCGGTCAAT
GAGAATGGAATTACCATTGCGGTTTTAGGCAGTGGTTTAGACCAAGTTTACCCTGCCCGCCACAAAAAACTTGCGGAACA
AATCGTTGATACAAGCGGTGCATTAGTGTCGGAATTTTTCCCTAGCCAGCCACCGATTGCTGAAAATTTCCCTAGACGAA
ATCGCATCATCAGCGGATTATCTCTCGGCACATTGGTTATTGAAGCCACGGTGAACAGTGGCTCGCTCATCACTGCCCGT
TATGCGTTAGAGCAAGGGAGAGAAGTCTTTGCATTGCCGAACGCAGTTCAAAACCCATATAGCGAAGGGTGCCATAAATT
GATTAAAGAAGGGGCATTACTGGTTGAAAATATTGATGACATTTTAGAAGCGATTGTGTGGCAACGGCAATCAGTGCATA
TTCAACCAAGTCTATTTGATACGAAACCTAAACAAGCGGTGAAATCCGAACCCAAATTTGCAAAAAATCTACCTGAACTG
ACCGCTTGTCAGCAACAATTGTTTGAACAGATTAGCCTTGAGCCGATCAGCATTGATGATCTTGCCAAAGCGACGGATAT
GGCGGTAGAAACCGCATTGATTGAGCTGCTGAATTTGGAGTTGTTGGGTGTTGTGAAGCAGGTGAGTGGGGGGTATGTAA
TCACTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(313-371)

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Glaesserella parasuis strain SC1401

97.6

100

0.976
  dprA Haemophilus influenzae Rd KW20

53.235

90.667

0.483
  dprA Vibrio campbellii strain DS40M4

46.649

99.467

0.464
  dprA Vibrio cholerae strain A1552

43.883

100

0.44
  dprA Legionella pneumophila strain ERS1305867

38.889

100

0.392
  dprA Neisseria gonorrhoeae MS11

42.994

83.733

0.36

Multiple sequence alignment