Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECS88_RS17985 Genome accession   NC_011742
Coordinates   3270633..3271109 (+) Length   158 a.a.
NCBI ID   WP_001186756.1    Uniprot ID   A0A0H2VD88
Organism   Escherichia coli S88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3265633..3276109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECS88_RS17950 (ECS88_3304) - 3266303..3267187 (+) 885 WP_000010416.1 GTPase -
  ECS88_RS17955 (ECS88_3305) - 3267390..3268070 (+) 681 WP_001282927.1 WYL domain-containing protein -
  ECS88_RS17960 (ECS88_3307) - 3268218..3268895 (+) 678 WP_001097310.1 hypothetical protein -
  ECS88_RS17965 (ECS88_3308) - 3268901..3269134 (+) 234 WP_001278287.1 DUF905 family protein -
  ECS88_RS17970 (ECS88_3309) - 3269224..3270042 (+) 819 WP_001175142.1 DUF932 domain-containing protein -
  ECS88_RS17975 (ECS88_3311) - 3270133..3270618 (+) 486 WP_000860054.1 antirestriction protein -
  ECS88_RS17985 (ECS88_3312) radC 3270633..3271109 (+) 477 WP_001186756.1 RadC family protein Machinery gene
  ECS88_RS17990 (ECS88_3313) - 3271178..3271399 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  ECS88_RS17995 (ECS88_3314) cbeA 3271478..3271855 (+) 378 WP_015953067.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ECS88_RS18000 (ECS88_3315) - 3271902..3272279 (+) 378 WP_001094436.1 TA system toxin CbtA family protein -
  ECS88_RS18005 (ECS88_3316) - 3272276..3272764 (+) 489 WP_000761714.1 DUF5983 family protein -
  ECS88_RS18010 (ECS88_3317) - 3272776..3272973 (+) 198 WP_000839254.1 DUF957 domain-containing protein -
  ECS88_RS18015 (ECS88_3318) - 3273058..3273903 (+) 846 WP_001280513.1 DUF4942 domain-containing protein -
  ECS88_RS18020 (ECS88_3319) - 3273974..3275509 (+) 1536 WP_000492897.1 EAL domain-containing protein -
  ECS88_RS18025 (ECS88_3320) - 3275906..3276076 (+) 171 Protein_3189 IS110 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.31 Da        Isoelectric Point: 7.6149

>NTDB_id=29061 ECS88_RS17985 WP_001186756.1 3270633..3271109(+) (radC) [Escherichia coli S88]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=29061 ECS88_RS17985 WP_001186756.1 3270633..3271109(+) (radC) [Escherichia coli S88]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VD88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment