Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | VIBHAR_RS00145 | Genome accession | NC_009783 |
| Coordinates | 28105..28698 (-) | Length | 197 a.a. |
| NCBI ID | WP_012126433.1 | Uniprot ID | A7MXC8 |
| Organism | Vibrio campbellii ATCC BAA-1116 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 23105..33698
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VIBHAR_RS00125 (VIBHAR_00027) | aroB | 23978..25078 (-) | 1101 | WP_012126430.1 | 3-dehydroquinate synthase | - |
| VIBHAR_RS00130 (VIBHAR_00028) | aroK | 25110..25628 (-) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| VIBHAR_RS00135 (VIBHAR_00029) | pilQ | 25817..27565 (-) | 1749 | WP_041853271.1 | type IV pilus secretin PilQ | Machinery gene |
| VIBHAR_RS00140 (VIBHAR_00030) | pilP | 27600..28115 (-) | 516 | WP_012126432.1 | pilus assembly protein PilP | Machinery gene |
| VIBHAR_RS00145 (VIBHAR_00031) | pilO | 28105..28698 (-) | 594 | WP_012126433.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| VIBHAR_RS00150 (VIBHAR_00032) | pilN | 28691..29266 (-) | 576 | WP_012126434.1 | PilN domain-containing protein | Machinery gene |
| VIBHAR_RS00155 (VIBHAR_00033) | pilM | 29250..30266 (-) | 1017 | WP_041853270.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| VIBHAR_RS00160 (VIBHAR_00034) | - | 30445..33012 (+) | 2568 | WP_012126436.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23016.52 Da Isoelectric Point: 4.8135
>NTDB_id=29009 VIBHAR_RS00145 WP_012126433.1 28105..28698(-) (pilO) [Vibrio campbellii ATCC BAA-1116]
MVNWQDLEMDEIAEWPLLPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKKDAK
MVNWQDLEMDEIAEWPLLPQLVAILLMVVLIQGFGYWFYLKPEEARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGDKESEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRANTYQFKPEEKKDAK
Nucleotide
Download Length: 594 bp
>NTDB_id=29009 VIBHAR_RS00145 WP_012126433.1 28105..28698(-) (pilO) [Vibrio campbellii ATCC BAA-1116]
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAATGGCCGCTGCTGCCTCAGTTGGTAGCGATTCTTCTTAT
GGTAGTGTTGATTCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCACTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCTGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATCGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CACTCAATATTGAGCTAACGGGTGACTTCCATGACATAGGTCGTTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAGAAAGATGCGAAATAA
ATGGTTAATTGGCAAGACCTAGAAATGGATGAAATCGCTGAATGGCCGCTGCTGCCTCAGTTGGTAGCGATTCTTCTTAT
GGTAGTGTTGATTCAAGGTTTTGGTTACTGGTTTTATTTGAAGCCAGAGGAAGCTCGCCTTAATACCTTGATCCAAGAAG
AGCAGACTTTAAAAGTCGCACTGAGGATCAAAGCCAATAAAGTCGCTGCACTGCCGCAGCTTCAGTCACAACTTGATGAA
CTGACCACCCGCTATGAACTGCTTTTGCAACAACTGCCTGCACAGAAAGAATTGGCGACCATGCTAGCGTCGGTTAATGA
ACTCGGCATCGATAACAAGCTGACATTTACGCGTATCGATTGGGGAGATAAAGAGTCAGAGCACTTCCTTTACCGTTTGC
CACTCAATATTGAGCTAACGGGTGACTTCCATGACATAGGTCGTTTTTCACAGGCCATCGCCACCTTACCACGCATCATC
ACATTTCAAGATGTAACTTGGCAGCGAGTCAGTCAAGAGAGTGAAACCTTGCACTTCCGTGTAAGAGCAAACACTTACCA
ATTCAAACCAGAGGAAAAGAAAGATGCGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
98.947 |
96.447 |
0.954 |
| pilO | Vibrio cholerae strain A1552 |
72.775 |
96.954 |
0.706 |