Detailed information NTG0029008

Bioinformatically predicted

Overview

• Name: pilP
• Type: Machinery gene
• Locus tag: VIBHAR_RS00140
• Genome accession: NC_009783
• Coordinates: 27600..28115 (-)
• Length: 171 a.a.
• NCBI ID: WP_012126432.1
• Uniprot ID: -
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 22600..33115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIBHAR_RS00125 (VIBHAR_00027)	aroB	23978..25078 (-)	1101	WP_012126430.1	3-dehydroquinate synthase	-
VIBHAR_RS00130 (VIBHAR_00028)	aroK	25110..25628 (-)	519	WP_010443904.1	shikimate kinase AroK	-
VIBHAR_RS00135 (VIBHAR_00029)	pilQ	25817..27565 (-)	1749	WP_041853271.1	type IV pilus secretin PilQ	Machinery gene
VIBHAR_RS00140 (VIBHAR_00030)	pilP	27600..28115 (-)	516	WP_012126432.1	pilus assembly protein PilP	Machinery gene
VIBHAR_RS00145 (VIBHAR_00031)	pilO	28105..28698 (-)	594	WP_012126433.1	type 4a pilus biogenesis protein PilO	Machinery gene
VIBHAR_RS00150 (VIBHAR_00032)	pilN	28691..29266 (-)	576	WP_012126434.1	PilN domain-containing protein	Machinery gene
VIBHAR_RS00155 (VIBHAR_00033)	pilM	29250..30266 (-)	1017	WP_041853270.1	type IV pilus biogenesis protein PilM	Machinery gene
VIBHAR_RS00160 (VIBHAR_00034)	-	30445..33012 (+)	2568	WP_012126436.1	penicillin-binding protein 1A	-

Sequence

Protein

• Length: 171 a.a.
• Molecular weight: 19122.17 Da
• Isoelectric Point: 10.3022

>NTDB_id=29008 VIBHAR_RS00140 WP_012126432.1 27600..28115(-) (pilP) [Vibrio campbellii ATCC BAA-1116]
MRNKSLLMVSMVSLLSGCQANDESLTDFIRGVENQARRDVAKLQPTEEYVVVSYEPEILRAPFELPKEATIATQPVARQD
CWQPPSRKRTGKLERFPLNQLRLKGVMGMGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide

• Length: 516 bp

>NTDB_id=29008 VIBHAR_RS00140 WP_012126432.1 27600..28115(-) (pilP) [Vibrio campbellii ATCC BAA-1116]
ATGCGAAATAAATCTTTGCTGATGGTTAGTATGGTGAGTCTGCTGAGTGGTTGCCAAGCCAATGATGAGTCACTAACCGA
TTTTATTCGCGGTGTAGAAAACCAAGCACGCCGTGATGTCGCCAAACTCCAGCCGACTGAAGAATATGTAGTGGTGAGTT
ACGAGCCTGAAATTTTGCGTGCCCCTTTTGAACTGCCAAAAGAGGCCACCATCGCAACTCAACCTGTTGCGAGGCAAGAC
TGTTGGCAACCGCCGTCAAGAAAGCGCACAGGCAAACTGGAACGTTTCCCACTCAACCAACTTCGCCTTAAGGGTGTGAT
GGGAATGGGCAGCAGCGTCTCGGGTTTGGTTCAAGCACCGAATGGCACAGTTTACAAAGTGAAGCCAGGTCAATACCTCG
GACGTAACAATGGCAAGGTAACCCACGTATCCCACAGCTATTTATTGATTAATGAAACCTTGCCAGACGGTTTAGGTTGT
TGGCAAAAGCGCAAAGTGAAGTTGGCGTTGAGATAG

Domains

Predicted by InterproScan.

• Pilus assembly protein, PilP (PilP) (25-170)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilP	Vibrio campbellii strain DS40M4	98.83	100	0.988
pilP	Vibrio cholerae strain A1552	56.395	100	0.567