Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   DDT09_RS15240 Genome accession   NZ_CP029070
Coordinates   3073288..3075597 (-) Length   769 a.a.
NCBI ID   WP_061862531.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3068288..3080597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS15200 (DDT09_15200) - 3068748..3069179 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  DDT09_RS15205 (DDT09_15205) - 3069179..3069520 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  DDT09_RS15210 (DDT09_15210) - 3069513..3070994 (+) 1482 WP_061862530.1 Na+/H+ antiporter subunit D -
  DDT09_RS15215 (DDT09_15215) - 3071000..3071476 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  DDT09_RS15220 (DDT09_15220) - 3071476..3071760 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  DDT09_RS15225 (DDT09_15225) mnhG 3071744..3072118 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  DDT09_RS15230 (DDT09_15230) - 3072158..3072541 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  DDT09_RS15235 (DDT09_15235) comA 3072563..3073207 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  DDT09_RS15240 (DDT09_15240) comP 3073288..3075597 (-) 2310 WP_061862531.1 histidine kinase Regulator
  DDT09_RS15245 (DDT09_15245) comX 3075617..3075793 (-) 177 WP_007408675.1 competence pheromone ComX -
  DDT09_RS15250 (DDT09_15250) comQ 3075793..3076677 (-) 885 WP_061862640.1 class 1 isoprenoid biosynthesis enzyme Regulator
  DDT09_RS15255 (DDT09_15255) degQ 3076862..3077002 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  DDT09_RS15265 (DDT09_15265) - 3077468..3077809 (+) 342 WP_061862532.1 hypothetical protein -
  DDT09_RS15270 (DDT09_15270) - 3077816..3079039 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -

Sequence


Protein


Download         Length: 769 a.a.        Molecular weight: 89139.54 Da        Isoelectric Point: 8.9349

>NTDB_id=289982 DDT09_RS15240 WP_061862531.1 3073288..3075597(-) (comP) [Bacillus amyloliquefaciens strain ALB69]
MKNFIKQFTISVIILSLVYVCYVSYININGIIIGTKVIENKNKQFQVIEMSETTYGKFVGLEKGDIILKINKEKPSAKFL
KGDNLSHIKSLDVSRNGKQIHLDDFDIVNLDKSYSFFVFVLPLVFYFLSIVCIFYILKVNQTRKSFAGYILILFLLDISI
AYISAGGPFRGHSFNRYVNLFTFIASPIFYLQFIQQYFEELGKKFANRLINFLYIFPIFNVILEFFRKKLPFENIITNLN
LISFFLVTLSGFVLVFYHLYKYKYSEHAYILKVLILTNTLSFAPFLLFYVAPNILTGDYIFPALASASLLVLIPFGLVYQ
FVANKIFDIEFILGRMRYYTLLAVIPTLVIVGVLSVWAGTNALQMNPIRQTVFIFIVMFAVFYFKEIIDFKFRLKRFSEK
FNYQDSIFKYTQLIRSITSLKQMFKELKKTILDVLLVSKAYVFEVTSEGDILYHDKRDNEPDWEMYSKEFKKVTSEIGKI
IELNRGFLIKIGERGGSSYVLLCLSSINTPRLTRDEISWLKTLSFYTSVSMENVIQIEELMNHLQDLKQQGSNPVWLKKL
MFTIEEKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEEPCQLEVQDKLHQMNEQMSDVILMTRETCHELRPQLLYD
LGLVKAVSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLISIQNKVILHYEDDG
VGCNQEKGGGQSMSMGLSGIKERVRALDGRMKIDTSEGNGFKVDIEMEL

Nucleotide


Download         Length: 2310 bp        

>NTDB_id=289982 DDT09_RS15240 WP_061862531.1 3073288..3075597(-) (comP) [Bacillus amyloliquefaciens strain ALB69]
GTGAAAAACTTTATTAAACAATTCACTATTTCAGTCATTATCTTAAGCCTCGTTTATGTTTGCTATGTTTCATATATAAA
CATAAATGGGATTATAATCGGGACAAAAGTTATTGAAAATAAAAACAAACAATTCCAAGTAATAGAGATGTCAGAAACTA
CTTACGGGAAATTCGTAGGTTTAGAAAAAGGTGACATCATTCTAAAAATCAACAAAGAAAAACCATCTGCTAAATTTTTA
AAAGGAGATAATCTTAGTCATATCAAAAGTTTAGATGTAAGCAGAAATGGAAAGCAAATTCATTTAGATGATTTTGATAT
TGTTAATTTAGACAAATCCTATAGCTTTTTTGTATTCGTTCTTCCACTTGTGTTTTATTTTTTAAGTATAGTATGTATAT
TTTACATTCTAAAGGTGAATCAAACAAGAAAATCGTTTGCGGGATACATTTTAATTTTGTTTTTGTTAGATATTTCAATT
GCTTATATAAGCGCAGGAGGACCATTTAGAGGACATTCATTTAACAGGTATGTCAATTTGTTCACATTTATAGCTTCTCC
TATATTTTATCTTCAGTTCATACAACAATATTTTGAGGAATTAGGAAAGAAGTTTGCAAATCGTCTAATCAATTTCTTAT
ATATATTTCCGATTTTTAATGTTATTTTGGAATTTTTCCGTAAGAAATTACCTTTTGAAAACATTATAACAAACCTTAAT
CTTATCTCGTTTTTTCTCGTTACTCTTTCAGGTTTTGTTCTCGTGTTCTATCACTTATATAAGTATAAATATTCAGAGCA
TGCTTATATTTTGAAAGTTTTAATTCTGACAAATACACTTTCTTTTGCTCCATTTTTACTTTTTTACGTCGCACCTAATA
TTTTAACTGGTGATTATATATTTCCAGCACTGGCATCAGCCTCATTGCTTGTCCTTATCCCATTTGGATTAGTATATCAG
TTTGTTGCAAATAAAATATTTGATATAGAATTTATATTAGGAAGAATGAGGTATTATACTTTACTGGCTGTAATCCCAAC
GCTAGTTATTGTCGGAGTTTTATCGGTCTGGGCGGGAACAAATGCGCTTCAAATGAATCCTATTAGACAGACTGTTTTCA
TCTTTATCGTAATGTTTGCTGTATTTTACTTTAAAGAAATAATAGATTTTAAATTTCGGTTAAAACGTTTTTCTGAAAAA
TTTAATTATCAAGATAGTATATTCAAATATACTCAGCTTATCAGAAGCATAACATCTTTAAAACAAATGTTTAAAGAACT
AAAAAAGACGATTCTGGATGTTCTACTTGTCAGTAAAGCTTATGTCTTTGAAGTTACCTCTGAGGGTGACATTTTATATC
ATGATAAAAGGGATAATGAACCTGATTGGGAAATGTATTCAAAAGAATTTAAGAAGGTTACTTCAGAGATTGGAAAAATC
ATTGAGCTAAACCGCGGTTTCTTAATCAAGATAGGAGAACGCGGGGGAAGTTCTTATGTTTTGCTTTGTTTGTCCTCCAT
TAATACACCGAGACTGACACGGGATGAGATTTCATGGCTGAAAACATTGTCTTTCTATACGAGTGTCTCTATGGAAAACG
TGATACAGATCGAAGAACTCATGAACCATTTACAAGATCTAAAACAACAAGGCTCAAACCCGGTCTGGCTCAAAAAGCTG
ATGTTTACGATCGAGGAAAAGCAGCGTTCGGATTTGGCCCGTGATCTGCATGATTCAGTGCTGCAGGACTTGATTTCTTT
GAAGCGCCAGTGTGAGCTGTTTCTGGCAGATTTTAAGAAAGAAGAGCCTTGCCAGTTAGAGGTGCAGGACAAGCTTCATC
AGATGAATGAGCAGATGTCGGATGTCATTTTGATGACCCGGGAGACGTGCCATGAGCTGCGTCCTCAGCTGCTGTATGAT
TTGGGTCTGGTCAAGGCGGTATCCAAGCTTGCCGCGCAGCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGG
CCGGTTTACGGCGGCGCTGGATTTGGATACGCAGCTGAATTTGTACCGCATTATTCAGGAATTTCTTTCGAACGCCATGA
AGCATTCACAGGCGAATGAGGTGCTGATTATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGGT
GTCGGCTGCAATCAGGAAAAAGGCGGCGGCCAGTCGATGAGCATGGGTCTTTCGGGTATTAAGGAGCGCGTCCGTGCGCT
TGACGGACGGATGAAAATCGACACAAGTGAAGGAAACGGTTTTAAAGTAGATATTGAAATGGAATTGTAA

Domains


Predicted by InterproScan.

(569-638)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

75.357

100

0.756


Multiple sequence alignment