Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DDT09_RS15235 Genome accession   NZ_CP029070
Coordinates   3072563..3073207 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain ALB69     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3067563..3078207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDT09_RS15200 (DDT09_15200) - 3068748..3069179 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  DDT09_RS15205 (DDT09_15205) - 3069179..3069520 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  DDT09_RS15210 (DDT09_15210) - 3069513..3070994 (+) 1482 WP_061862530.1 Na+/H+ antiporter subunit D -
  DDT09_RS15215 (DDT09_15215) - 3071000..3071476 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  DDT09_RS15220 (DDT09_15220) - 3071476..3071760 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  DDT09_RS15225 (DDT09_15225) mnhG 3071744..3072118 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  DDT09_RS15230 (DDT09_15230) - 3072158..3072541 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  DDT09_RS15235 (DDT09_15235) comA 3072563..3073207 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  DDT09_RS15240 (DDT09_15240) comP 3073288..3075597 (-) 2310 WP_061862531.1 histidine kinase Regulator
  DDT09_RS15245 (DDT09_15245) comX 3075617..3075793 (-) 177 WP_007408675.1 competence pheromone ComX -
  DDT09_RS15250 (DDT09_15250) comQ 3075793..3076677 (-) 885 WP_061862640.1 class 1 isoprenoid biosynthesis enzyme Regulator
  DDT09_RS15255 (DDT09_15255) degQ 3076862..3077002 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  DDT09_RS15265 (DDT09_15265) - 3077468..3077809 (+) 342 WP_061862532.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=289981 DDT09_RS15235 WP_003152052.1 3072563..3073207(-) (comA) [Bacillus amyloliquefaciens strain ALB69]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=289981 DDT09_RS15235 WP_003152052.1 3072563..3073207(-) (comA) [Bacillus amyloliquefaciens strain ALB69]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment