Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BTJ40_RS01050 Genome accession   NZ_CP029064
Coordinates   218037..219527 (-) Length   496 a.a.
NCBI ID   WP_108731379.1    Uniprot ID   A0A2S1JM92
Organism   Microbulbifer sp. A4B17     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 213037..224527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTJ40_RS01015 (BTJ40_01015) - 213421..213978 (+) 558 WP_108731372.1 GNAT family N-acetyltransferase -
  BTJ40_RS01020 (BTJ40_01020) - 214125..215075 (+) 951 WP_108731373.1 alpha/beta hydrolase -
  BTJ40_RS01025 (BTJ40_01025) bla 215091..215957 (+) 867 WP_369974277.1 subclass B3 metallo-beta-lactamase -
  BTJ40_RS01030 (BTJ40_01030) - 215989..216186 (-) 198 WP_108731375.1 hypothetical protein -
  BTJ40_RS01035 (BTJ40_01035) - 216183..216626 (-) 444 WP_108731376.1 MarR family winged helix-turn-helix transcriptional regulator -
  BTJ40_RS01040 (BTJ40_01040) - 216633..216920 (-) 288 WP_108731377.1 putative quinol monooxygenase -
  BTJ40_RS01045 (BTJ40_01045) - 217188..217925 (+) 738 WP_157953849.1 YopT-type cysteine protease domain-containing protein -
  BTJ40_RS01050 (BTJ40_01050) comM 218037..219527 (-) 1491 WP_108731379.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BTJ40_RS01055 (BTJ40_01055) - 219557..219799 (-) 243 WP_108735120.1 accessory factor UbiK family protein -
  BTJ40_RS01060 (BTJ40_01060) - 220226..220951 (+) 726 WP_108731380.1 TorF family putative porin -
  BTJ40_RS01065 (BTJ40_01065) - 221005..221343 (+) 339 WP_108731381.1 P-II family nitrogen regulator -
  BTJ40_RS01070 (BTJ40_01070) - 221398..222657 (+) 1260 WP_108731382.1 ammonium transporter -
  BTJ40_RS01075 (BTJ40_01075) - 222745..223083 (+) 339 WP_108731383.1 P-II family nitrogen regulator -
  BTJ40_RS01080 (BTJ40_01080) - 223499..223723 (+) 225 WP_108731384.1 hypothetical protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53524.14 Da        Isoelectric Point: 7.3137

>NTDB_id=289781 BTJ40_RS01050 WP_108731379.1 218037..219527(-) (comM) [Microbulbifer sp. A4B17]
MSLSVTYSRAQLGVSAPLVTVETHLANGLPAFHIVGLPEAAVRESRDRVRSALINSHFDFPQRRITVNLAPADLPKEGGR
YDLAIAIGILSASGQVPTEILEHYEFIGELALTGALREVSGSLPAAVACTNEDRKLVVPTENGAEAALATGEVRIASSLL
QVCAELHGRESMPKAVAEPVAEEHLCADLADVRGQLKARRALEVAAAGGHNLLFYGPPGTGKTMLASRLPGILPPLTTEE
SLEVASVYSSAGLPHQSLRPFRAPHHSASPTALVGGGSTPRPGEISLAHRGVLFLDEMPEFPRHALEILREPLENGEVRI
SRARAQVTYPAHFQLVGAMNPCPCGYLGEPRCRCTPDQIDRYRNKLSGPLLDRIDMQVEVGTMNAVQLQDSAPGETSDAV
RERVCAARQQQIQRQGKTNNLLKGTELEKCCALGEKEKHLLRQSVEKLGLSARSYHRILKVARTLADLANLESISTAQIA
EALAYRNLDRRQTAKA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=289781 BTJ40_RS01050 WP_108731379.1 218037..219527(-) (comM) [Microbulbifer sp. A4B17]
GTGAGCCTCTCAGTCACCTACTCCCGAGCTCAGCTCGGGGTCTCTGCACCTCTGGTTACCGTAGAAACCCACCTGGCAAA
TGGACTCCCTGCTTTTCATATTGTGGGTTTACCGGAAGCGGCAGTGCGGGAGAGCCGCGACCGTGTCCGCAGCGCCCTAA
TCAACAGCCATTTCGACTTCCCCCAGCGCCGTATTACCGTCAACCTCGCCCCCGCCGACCTACCCAAGGAAGGTGGCCGC
TACGATCTGGCCATCGCCATCGGTATTCTCAGCGCCTCGGGGCAGGTTCCCACCGAGATTCTGGAACACTATGAATTTAT
TGGCGAGCTAGCACTCACCGGCGCCTTGCGGGAAGTAAGTGGTAGCTTACCGGCAGCGGTAGCCTGCACCAATGAAGACC
GTAAACTGGTTGTGCCTACGGAGAACGGTGCGGAAGCCGCGCTGGCAACCGGCGAAGTCAGAATCGCCAGCTCCTTACTG
CAGGTTTGCGCCGAACTTCATGGGCGTGAATCTATGCCTAAAGCTGTTGCAGAGCCTGTTGCCGAAGAGCACCTGTGCGC
GGACTTAGCCGATGTACGCGGCCAACTAAAGGCCCGCCGCGCTCTCGAAGTGGCAGCAGCCGGGGGCCACAATCTGCTTT
TTTACGGTCCTCCCGGCACCGGCAAAACCATGTTGGCCAGCCGCCTGCCGGGTATATTGCCCCCGCTGACAACTGAAGAG
TCATTAGAGGTAGCGAGCGTTTACTCCAGCGCAGGCCTACCTCACCAGAGCCTGCGCCCTTTCAGGGCCCCACACCACAG
CGCCTCACCAACAGCGCTGGTCGGTGGTGGCAGCACCCCAAGGCCCGGTGAGATCTCCCTCGCGCACCGGGGAGTCCTAT
TCCTCGATGAAATGCCCGAATTCCCCAGGCACGCCCTGGAGATACTGCGGGAACCCCTGGAGAATGGTGAAGTGCGAATC
TCCCGCGCCCGAGCCCAAGTCACCTACCCCGCCCACTTTCAGCTGGTCGGGGCTATGAACCCCTGCCCTTGTGGGTATTT
AGGTGAGCCCCGCTGTCGCTGCACGCCGGACCAGATAGATCGATATCGCAACAAACTCTCTGGCCCCCTGCTGGATCGTA
TCGATATGCAGGTGGAGGTGGGCACTATGAATGCTGTGCAATTACAGGATTCAGCTCCCGGAGAAACTTCCGATGCCGTG
AGAGAGAGAGTTTGTGCCGCGCGCCAGCAACAAATACAGCGGCAAGGCAAGACAAATAACCTGTTAAAAGGCACAGAGCT
GGAAAAGTGCTGTGCCTTGGGGGAAAAGGAAAAGCACCTCTTACGCCAGTCGGTGGAAAAACTGGGGCTATCCGCGCGTA
GCTACCACCGTATTCTTAAAGTAGCTCGAACCCTGGCAGACCTCGCTAATTTAGAGAGTATAAGTACTGCGCAAATTGCC
GAGGCACTTGCCTACCGCAATCTGGATAGGCGTCAAACGGCTAAAGCCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(394-486)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1JM92

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.332

100

0.554
  comM Vibrio campbellii strain DS40M4

54.509

100

0.548
  comM Haemophilus influenzae Rd KW20

53.586

100

0.542
  comM Glaesserella parasuis strain SC1401

52.695

100

0.532
  comM Legionella pneumophila str. Paris

49.698

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.698

100

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.38

100

0.478

Multiple sequence alignment