Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   DCO55_RS03655 Genome accession   NZ_CP029053
Coordinates   691386..691823 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain c021     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 686386..696823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS03630 - 686879..688030 (+) 1152 WP_253684238.1 sensor histidine kinase KdpD -
  DCO55_RS03635 - 688054..688698 (+) 645 WP_079261384.1 DUF4118 domain-containing protein -
  DCO55_RS03640 (DCO55_03715) uvrB 688800..690773 (-) 1974 WP_100608655.1 excinuclease ABC subunit UvrB -
  DCO55_RS03645 (DCO55_03720) - 690927..691157 (+) 231 WP_002852327.1 hypothetical protein -
  DCO55_RS03650 (DCO55_03725) - 691147..691389 (+) 243 WP_002854947.1 hypothetical protein -
  DCO55_RS03655 (DCO55_03730) Cj0683 691386..691823 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  DCO55_RS03660 (DCO55_03735) priA 691805..693658 (+) 1854 WP_002873331.1 primosomal protein N' -
  DCO55_RS03665 (DCO55_03740) - 693668..694342 (-) 675 Protein_719 DUF2972 domain-containing protein -
  DCO55_RS03670 (DCO55_03745) istB 694558..695316 (+) 759 WP_032491274.1 IS21-like element helper ATPase IstB -
  DCO55_RS03675 (DCO55_03750) - 695438..695839 (+) 402 WP_253684240.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=289712 DCO55_RS03655 WP_002852324.1 691386..691823(+) (Cj0683) [Campylobacter jejuni strain c021]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=289712 DCO55_RS03655 WP_002852324.1 691386..691823(+) (Cj0683) [Campylobacter jejuni strain c021]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment