Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   DCO55_RS03240 Genome accession   NZ_CP029053
Coordinates   609950..610600 (-) Length   216 a.a.
NCBI ID   WP_057035543.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 604950..615600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS03205 (DCO55_03290) - 605339..606343 (+) 1005 WP_079263945.1 hypothetical protein -
  DCO55_RS03210 (DCO55_03295) tlyA 606340..607101 (+) 762 WP_002872582.1 TlyA family RNA methyltransferase -
  DCO55_RS03215 (DCO55_03300) ribF 607067..607921 (+) 855 WP_044261254.1 bifunctional riboflavin kinase/FAD synthetase -
  DCO55_RS03220 (DCO55_03305) cmoA 607908..608618 (+) 711 WP_079460098.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  DCO55_RS03225 (DCO55_03310) - 608608..608823 (-) 216 WP_052817280.1 EexN family lipoprotein -
  DCO55_RS03230 (DCO55_03315) - 608820..609248 (-) 429 WP_044261251.1 EexN family lipoprotein -
  DCO55_RS03235 (DCO55_03320) - 609307..609939 (-) 633 WP_044261250.1 trimeric intracellular cation channel family protein -
  DCO55_RS03240 (DCO55_03325) CJE0566 609950..610600 (-) 651 WP_057035543.1 DNA/RNA non-specific endonuclease Regulator
  DCO55_RS03245 (DCO55_03330) nth 610597..611223 (-) 627 WP_002861300.1 endonuclease III -
  DCO55_RS03250 (DCO55_03335) peb4 611304..612125 (+) 822 WP_044261247.1 peptidylprolyl isomerase PEB4 -
  DCO55_RS03255 (DCO55_03340) fbaA 612125..613190 (+) 1066 Protein_637 class II fructose-bisphosphate aldolase -
  DCO55_RS03260 (DCO55_03345) - 613285..614727 (+) 1443 WP_057035541.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25441.13 Da        Isoelectric Point: 9.5471

>NTDB_id=289710 DCO55_RS03240 WP_057035543.1 609950..610600(-) (CJE0566) [Campylobacter jejuni strain c021]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEALNLKDKQIKKRPRFED
DANIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=289710 DCO55_RS03240 WP_057035543.1 609950..610600(-) (CJE0566) [Campylobacter jejuni strain c021]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTCGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTACAAACTCAAAG
GTACAAAAGCTGTTGCTTATAAAGTAGAAGCTTTAAATTTAAAAGATAAGCAAATTAAAAAACGTCCACGCTTTGAAGAT
GATGCAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCTAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment