Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DCO55_RS03425 Genome accession   NZ_CP029053
Coordinates   651831..652604 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter jejuni strain c021     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 646831..657604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS03410 (DCO55_03495) - 647680..649614 (-) 1935 WP_212147147.1 ribonuclease R family protein -
  DCO55_RS03415 (DCO55_03500) ilvC 649733..650755 (+) 1023 WP_052817302.1 ketol-acid reductoisomerase -
  DCO55_RS03420 (DCO55_03505) - 650759..651841 (+) 1083 WP_253684230.1 divergent polysaccharide deacetylase family protein -
  DCO55_RS03425 (DCO55_03510) dprA 651831..652604 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  DCO55_RS03430 (DCO55_03515) ruvX 652601..652984 (+) 384 WP_253684231.1 Holliday junction resolvase RuvX -
  DCO55_RS03435 (DCO55_03520) - 653013..653852 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  DCO55_RS03440 (DCO55_03525) msrA 654042..654524 (-) 483 Protein_674 peptide-methionine (S)-S-oxide reductase MsrA -
  DCO55_RS03445 (DCO55_03530) ppa 654566..655084 (-) 519 WP_002871349.1 inorganic diphosphatase -
  DCO55_RS03450 (DCO55_03535) adk 655094..655672 (-) 579 WP_052794065.1 adenylate kinase -
  DCO55_RS03455 (DCO55_03540) aspS 655669..657420 (-) 1752 WP_253684232.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=289711 DCO55_RS03425 WP_002868431.1 651831..652604(+) (dprA) [Campylobacter jejuni strain c021]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=289711 DCO55_RS03425 WP_002868431.1 651831..652604(+) (dprA) [Campylobacter jejuni strain c021]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment