Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DDE02_RS18005 Genome accession   NZ_CP029005
Coordinates   3707787..3709274 (+) Length   495 a.a.
NCBI ID   WP_002121164.1    Uniprot ID   A0A8I1H7H2
Organism   Acinetobacter pittii strain AbW39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3702787..3714274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDE02_RS17980 (DDE02_18135) ribD 3703742..3704827 (-) 1086 WP_016802732.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  DDE02_RS17985 (DDE02_18140) nrdR 3704843..3705301 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  DDE02_RS17990 (DDE02_18145) amtB 3705425..3706819 (-) 1395 WP_005079483.1 ammonium transporter -
  DDE02_RS17995 (DDE02_18150) glnK 3706877..3707215 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  DDE02_RS18000 (DDE02_18155) - 3707494..3707721 (+) 228 WP_002121136.1 accessory factor UbiK family protein -
  DDE02_RS18005 (DDE02_18160) comM 3707787..3709274 (+) 1488 WP_002121164.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DDE02_RS18010 (DDE02_18165) yieF 3709378..3709923 (+) 546 WP_002121179.1 NADPH-dependent FMN reductase -
  DDE02_RS18015 (DDE02_18170) mocR 3709948..3711381 (-) 1434 WP_002121228.1 PLP-dependent aminotransferase family protein -
  DDE02_RS18020 (DDE02_18175) - 3711493..3712269 (+) 777 WP_002121159.1 aldolase -
  DDE02_RS18025 (DDE02_18180) - 3712285..3713163 (+) 879 WP_002121240.1 dihydrodipicolinate synthase family protein -
  DDE02_RS18030 (DDE02_18185) - 3713205..3714017 (-) 813 WP_002121202.1 TorF family putative porin -
  DDE02_RS18035 (DDE02_18190) - 3714056..3714244 (-) 189 WP_002121272.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54466.52 Da        Isoelectric Point: 7.3646

>NTDB_id=289278 DDE02_RS18005 WP_002121164.1 3707787..3709274(+) (comM) [Acinetobacter pittii strain AbW39]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDISHLPNLECYPVSHL
KEVCDHFLGIKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYEQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=289278 DDE02_RS18005 WP_002121164.1 3707787..3709274(+) (comM) [Acinetobacter pittii strain AbW39]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTTTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGTCATGTAAGGCCAGTGTCAGGCACTTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAACAGTCAGGATATTAGCCATTTACCGAATCTTGAATGTTATCCAGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATAAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCCCTTTCTAAT
CAAGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGACAGCGTCCATTTCGGGCGCC
CCACCATACAGCATCAGCCATTGCACTAGTTGGGGGCGGCTCGCATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GCGTTTTGTTTTTAGATGAACTCCCTGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCCAGAGAGTATCAAGCGTTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAGGAACTGCAAGATCCAACACCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAGCAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGAGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.509
  comM Glaesserella parasuis strain SC1401

50.1

100

0.505
  comM Legionella pneumophila str. Paris

49.398

100

0.497
  comM Legionella pneumophila strain ERS1305867

49.398

100

0.497
  comM Haemophilus influenzae Rd KW20

48.898

100

0.493
  comM Vibrio campbellii strain DS40M4

47.677

100

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.123

100

0.469

Multiple sequence alignment