Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DC438_RS20200 Genome accession   NZ_CP028974
Coordinates   4214405..4215925 (+) Length   506 a.a.
NCBI ID   WP_085661328.1    Uniprot ID   -
Organism   Cronobacter sakazakii strain GZcsf-1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4209405..4220925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DC438_RS20180 (DC438_20235) - 4210966..4211895 (-) 930 WP_004387276.1 branched-chain amino acid transaminase -
  DC438_RS20185 (DC438_20240) ilvM 4211916..4212173 (-) 258 WP_004387277.1 acetolactate synthase 2 small subunit -
  DC438_RS20190 (DC438_20245) ilvG 4212170..4213816 (-) 1647 WP_126125879.1 acetolactate synthase 2 catalytic subunit -
  DC438_RS20195 (DC438_20250) ilvL 4213955..4214053 (-) 99 WP_071601137.1 ilv operon leader peptide -
  DC438_RS20200 (DC438_20255) comM 4214405..4215925 (+) 1521 WP_085661328.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DC438_RS20205 (DC438_20260) - 4216004..4216342 (-) 339 WP_004387280.1 DUF413 domain-containing protein -
  DC438_RS20210 (DC438_20265) hdfR 4216450..4217283 (+) 834 WP_108695895.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54953.30 Da        Isoelectric Point: 7.5779

>NTDB_id=289072 DC438_RS20200 WP_085661328.1 4214405..4215925(+) (comM) [Cronobacter sakazakii strain GZcsf-1]
MSLSVIHTRAALGVKAPLVTVEVHISAGLPGLTIVGLPETTVKEARDRVRSALINSGYEFPAKKVTINLAPADLPKEGGR
YDLPIAIALLAASEQLSASHLGDYEFVGELALTGALRGVPGAISAAIEALGCKRKIIVAHDNGPEVGLINKEGCLVAHHL
QEVCAFLEGKTQLECAEPSGFEFREPAGDLGEVIGQPQGKRALELTAAGGHNLLFIGPPGTGKTMLASRLNGLLPPLSDQ
EALESAAILSLVYPVSLHHQWRQRPFRAPHHSASLNAMVGGGAIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GQIHLSRTRAKLTYPARFQLIAAMNPSPTGHYKGNHNRCSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGMLSQAGQTG
ESSAQVRERVIVSRERQFARQGKLNAMLDNREIRQFCVLSPEDAQWLEAALIKLGLSVRAWQRLLKVARTIADCEQKQWI
GREHLQEALSYRAIDRMLAHLQNMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=289072 DC438_RS20200 WP_085661328.1 4214405..4215925(+) (comM) [Cronobacter sakazakii strain GZcsf-1]
ATGTCGTTATCAGTTATTCATACCCGCGCTGCGCTTGGGGTTAAGGCGCCGCTCGTAACAGTTGAAGTACATATCAGCGC
CGGGCTGCCCGGCCTGACTATTGTCGGCTTACCGGAAACCACCGTTAAAGAAGCCAGAGATCGCGTACGCAGCGCGCTTA
TCAATAGCGGTTATGAATTTCCGGCTAAAAAGGTAACCATCAATCTGGCACCGGCGGATCTACCTAAAGAAGGTGGGCGA
TACGATTTACCTATCGCCATCGCGCTTCTGGCCGCCTCTGAGCAATTGAGCGCATCCCATCTTGGTGACTATGAATTTGT
AGGTGAGCTGGCGCTTACAGGCGCGCTGAGAGGCGTTCCCGGCGCAATTTCAGCCGCCATCGAGGCTCTGGGTTGTAAAA
GGAAAATTATCGTCGCGCATGATAATGGCCCTGAAGTAGGACTCATCAATAAAGAGGGTTGCCTGGTGGCTCATCATCTG
CAGGAGGTCTGCGCCTTCCTGGAAGGAAAAACACAGCTGGAATGCGCTGAGCCATCCGGCTTTGAATTCAGAGAGCCGGC
GGGAGATCTGGGCGAAGTTATCGGTCAACCACAGGGAAAGCGCGCGCTTGAGTTAACCGCAGCGGGTGGACATAACCTGC
TTTTTATTGGGCCTCCTGGTACAGGTAAAACCATGCTTGCCAGTAGGCTCAATGGGTTACTGCCGCCTCTGAGCGACCAG
GAGGCGCTGGAGAGCGCGGCGATACTCAGCCTGGTCTACCCCGTCTCTTTACACCATCAATGGCGTCAGCGTCCATTCAG
GGCCCCTCACCATAGCGCATCGCTTAACGCCATGGTGGGCGGAGGAGCAATTCCTGCGCCAGGAGAGATCTCACTTGCCC
ATAATGGCGTGCTTTTTCTGGATGAGTTACCTGAGTTTGAACGTCGCGTACTGGATGCTTTACGCGAGCCGATTGAATCA
GGGCAAATCCATCTTTCACGAACCAGGGCGAAATTAACCTATCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
TCCGACGGGGCACTACAAAGGCAATCACAATCGTTGCTCACCGGAGCAAACGCTGCGCTATCTTGGGCGGCTTTCCGGGC
CATTTCTAGACAGGTTTGATCTCTCTCTTGAAATCCCGCTTCCCCCGCCGGGTATGCTTAGCCAGGCAGGACAGACCGGT
GAAAGCAGCGCGCAAGTAAGGGAACGAGTCATTGTTAGCAGAGAGCGTCAGTTTGCACGTCAGGGAAAACTCAACGCCAT
GCTGGATAACCGGGAAATACGTCAGTTTTGTGTGCTTAGTCCGGAGGACGCGCAGTGGCTGGAGGCAGCATTAATCAAAC
TGGGGTTGTCGGTTCGCGCCTGGCAGCGTTTACTTAAAGTGGCACGCACAATTGCAGATTGTGAACAGAAACAATGGATT
GGTCGTGAGCATCTTCAGGAGGCACTGAGCTATCGTGCAATAGACAGGATGCTGGCGCATTTACAAAACATGATGGCATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

61.297

100

0.617
  comM Vibrio cholerae strain A1552

60.359

99.209

0.599
  comM Glaesserella parasuis strain SC1401

59.763

100

0.599
  comM Vibrio campbellii strain DS40M4

59.96

99.209

0.595
  comM Legionella pneumophila str. Paris

47.106

99.012

0.466
  comM Legionella pneumophila strain ERS1305867

47.106

99.012

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.615

100

0.439

Multiple sequence alignment