Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AM410_RS07590 Genome accession   NZ_CP028950
Coordinates   1559188..1560708 (-) Length   506 a.a.
NCBI ID   WP_073397814.1    Uniprot ID   -
Organism   Enterobacter cloacae complex sp. FDA-CDC-AR_0164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1554188..1565708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM410_RS07580 (AM410_07570) hdfR 1557882..1558703 (-) 822 WP_014172169.1 HTH-type transcriptional regulator HdfR -
  AM410_RS07585 (AM410_07575) - 1558822..1559160 (+) 339 WP_014172168.1 DUF413 domain-containing protein -
  AM410_RS07590 (AM410_07580) comM 1559188..1560708 (-) 1521 WP_073397814.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AM410_RS07595 (AM410_07585) ilvL 1561048..1561146 (+) 99 WP_001311244.1 ilv operon leader peptide -
  AM410_RS07600 (AM410_07590) ilvX 1561233..1561283 (+) 51 WP_102046757.1 peptide IlvX -
  AM410_RS07605 (AM410_07595) ilvG 1561286..1562932 (+) 1647 WP_014172167.1 acetolactate synthase 2 catalytic subunit -
  AM410_RS07610 (AM410_07600) ilvM 1562929..1563192 (+) 264 WP_014172166.1 acetolactate synthase 2 small subunit -
  AM410_RS07615 (AM410_07605) ilvE 1563211..1564140 (+) 930 WP_025202772.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55090.14 Da        Isoelectric Point: 7.1541

>NTDB_id=288860 AM410_RS07590 WP_073397814.1 1559188..1560708(-) (comM) [Enterobacter cloacae complex sp. FDA-CDC-AR_0164]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNSCRLGAYEFIGELALTGALRGVPGAISGALEAIRAGRQIIVANENGAEVSLIAERGCLLAGHL
QEVCAYLEGQHVLSEPEESGDPLAESPDDLSDIYGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSVSLQKQWRRRPFRSPHHSASLAAMVGGGTIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPSGHYQGNHNRSTPEQMLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSARG
ESTVEVRERVIAAQARQYMRQHKLNARLDNAEIRQFCPLNTEDSCWLEDTLTRFGLSIRAWQRLIKVARTIADVEKCPDI
ERRHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=288860 AM410_RS07590 WP_073397814.1 1559188..1560708(-) (comM) [Enterobacter cloacae complex sp. FDA-CDC-AR_0164]
ATGTCACTGTCAGTTGTTTATACCCGAGCGGCCATTGGAGTAAAAGCACCGCTTATTTCGGTAGAAGTTCATCTCAGCAA
CGGGCTGCCCGGGCTGACGCTGGTTGGATTGCCGGAGACCACGGTAAAGGAAGCCAGAGATCGGGTGCGCAGTGCGATTA
TTAATAGCGGTTATACCTTTCCGGCAAAGAAAATCACCATCAACCTTGCGCCTGCAGACTTGCCTAAAGAGGGAGGGCGA
TATGATTTACCTATCGCTATAGCGCTCCTCGCCGCCTCTGAGCAGCTTAACAGCTGCAGACTAGGCGCATATGAGTTCAT
CGGTGAACTGGCGCTCACAGGCGCGCTGAGGGGCGTTCCTGGTGCCATCTCGGGTGCACTGGAGGCTATTCGCGCAGGTC
GACAAATCATTGTTGCCAATGAAAATGGTGCAGAAGTGAGCCTGATAGCCGAGAGAGGATGTCTGCTAGCCGGGCATTTA
CAGGAAGTGTGCGCGTATCTTGAGGGGCAACATGTGCTGTCAGAGCCGGAAGAATCAGGCGATCCCCTGGCAGAAAGCCC
GGACGATCTGAGCGATATTTACGGCCAGGAGCAGGGGAAGCGGGCGCTGGAGATCACCGCTGCCGGCGGACATAACCTGT
TGTTGATTGGCCCACCGGGTACAGGAAAAACGATGCTGGCGAGCAGGTTGAATGGTTTACTGCCTCCACTTAATAACCAT
GAAGCGCTGGAAAGCGCGGCGATATTTAGTCTGGTGAGTTCAGTGTCATTGCAAAAACAGTGGCGACGTCGCCCGTTTCG
CTCTCCGCACCACAGTGCCTCACTGGCGGCCATGGTCGGCGGTGGCACCATACCAGGGCCGGGAGAGATCTCTCTGGCGC
ACAACGGCATCCTGTTTCTGGATGAACTGCCTGAATTTGAACGCCGCGTTCTGGATGCGCTGAGGGAGCCCATCGAATCG
GGTGAGATCCACATCTCCCGTACACGCGCCAAAATAAGCTATCCCGCGCGGTTCCAGCTGGTAGCGGCAATGAACCCCAG
CCCATCGGGCCATTATCAGGGAAACCACAATCGCTCCACGCCTGAACAGATGCTGCGCTACCTGGGGAAGTTATCTGGTC
CTTTCCTGGATCGTTTCGATTTGTCGCTGGAAATCCCCTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGCGCCAGAGGA
GAGAGTACGGTGGAGGTTCGCGAGCGGGTTATCGCCGCGCAGGCCCGGCAGTATATGCGTCAACATAAGCTGAATGCCCG
TCTTGATAACGCTGAGATTCGGCAGTTTTGTCCTCTTAATACTGAAGATTCATGCTGGCTGGAGGATACGTTGACGCGCT
TTGGGCTTTCCATTCGCGCATGGCAGCGTCTTATAAAAGTCGCCCGCACTATCGCCGATGTGGAAAAGTGCCCTGACATT
GAGAGGCGGCATCTGCAGGAAGCGTTAAGCTATCGTGCGATCGATCGCTTGCTCCTGCACCTGCAAAAGTTACTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.159

99.209

0.597
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Haemophilus influenzae Rd KW20

57.76

100

0.581
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.439

Multiple sequence alignment