Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AM410_RS05380 Genome accession   NZ_CP028950
Coordinates   1099800..1100327 (-) Length   175 a.a.
NCBI ID   WP_014168221.1    Uniprot ID   -
Organism   Enterobacter cloacae complex sp. FDA-CDC-AR_0164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1094800..1105327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM410_RS05360 (AM410_05350) soxS 1095327..1095653 (+) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  AM410_RS05365 (AM410_05355) - 1095660..1097225 (-) 1566 WP_108647615.1 EAL domain-containing protein -
  AM410_RS05370 (AM410_05360) - 1097565..1098965 (-) 1401 WP_020882838.1 sensor domain-containing diguanylate cyclase -
  AM410_RS05375 (AM410_05365) - 1099455..1099736 (+) 282 WP_020882839.1 YjcB family protein -
  AM410_RS05380 (AM410_05370) ssb 1099800..1100327 (-) 528 WP_014168221.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AM410_RS05390 (AM410_05380) uvrA 1100579..1103401 (+) 2823 WP_108647617.1 excinuclease ABC subunit UvrA -
  AM410_RS05395 (AM410_05385) - 1103405..1103758 (-) 354 WP_014168219.1 MmcQ/YjbR family DNA-binding protein -
  AM410_RS05400 (AM410_05390) - 1103761..1104177 (-) 417 WP_014168218.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AM410_RS05405 (AM410_05395) aphA 1104291..1105004 (-) 714 WP_106503638.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18735.76 Da        Isoelectric Point: 5.2456

>NTDB_id=288855 AM410_RS05380 WP_014168221.1 1099800..1100327(-) (ssb) [Enterobacter cloacae complex sp. FDA-CDC-AR_0164]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=288855 AM410_RS05380 WP_014168221.1 1099800..1100327(-) (ssb) [Enterobacter cloacae complex sp. FDA-CDC-AR_0164]
ATGGCCAGCAGAGGCGTAAATAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCGGAAGTGGCTGGTGAGTATCTGCGTAAAGGTTCACAGGTTTATATT
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAAGCCGGCGCTGAGAAGTACACCACGGAAGTTGTGGTCAACGTGGG
TGGCACCATGCAGATGCTCGGTGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCAGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCGCGCAGTCTCGCCCACAGCAGCAGTCCGCGCCAGCA
CCGTCTAACGAACCCCCAATGGACTTCGACGACGATATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.783
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35

100

0.36

Multiple sequence alignment