Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AM368_RS13780 Genome accession   NZ_CP028949
Coordinates   2893099..2893629 (+) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain AR_0121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2888099..2898629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM368_RS13760 (AM368_13760) maa 2888123..2888680 (+) 558 WP_033649715.1 maltose O-acetyltransferase -
  AM368_RS13765 (AM368_13765) - 2888711..2889763 (-) 1053 WP_033649716.1 NAD(P)-dependent alcohol dehydrogenase -
  AM368_RS13770 (AM368_13770) uvrA 2889993..2892821 (-) 2829 WP_033636192.1 excinuclease ABC subunit UvrA -
  AM368_RS13780 (AM368_13780) ssb 2893099..2893629 (+) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AM368_RS13785 (AM368_13785) - 2893692..2894441 (-) 750 WP_033649717.1 3-oxoacyl-ACP reductase family protein -
  AM368_RS13790 (AM368_13790) bhsA 2894591..2894851 (-) 261 WP_033636189.1 multiple stress resistance protein BhsA -
  AM368_RS13795 (AM368_13795) - 2895048..2895491 (+) 444 WP_033636188.1 lipocalin-like domain-containing protein -
  AM368_RS13800 (AM368_13800) - 2895488..2896156 (+) 669 WP_033649718.1 glutathione S-transferase family protein -
  AM368_RS13805 (AM368_13805) - 2896204..2896611 (+) 408 WP_033649719.1 VOC family protein -
  AM368_RS13810 (AM368_13810) - 2896944..2898305 (+) 1362 WP_033636185.1 NCS2 family permease -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=288847 AM368_RS13780 WP_004936793.1 2893099..2893629(+) (ssb) [Serratia marcescens strain AR_0121]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=288847 AM368_RS13780 WP_004936793.1 2893099..2893629(+) (ssb) [Serratia marcescens strain AR_0121]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCGCGCCCGGCGCAGAACAGCGCTCCG
GCGACCAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment