Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DBX26_RS15330 Genome accession   NZ_CP028943
Coordinates   3266285..3267808 (-) Length   507 a.a.
NCBI ID   WP_118119683.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3261285..3272808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS15310 (DBX26_15285) - 3262513..3263499 (+) 987 WP_118119838.1 serine/threonine protein kinase -
  DBX26_RS15315 (DBX26_15290) - 3263533..3264135 (+) 603 WP_118119677.1 thiol:disulfide interchange protein DsbA/DsbL -
  DBX26_RS15320 (DBX26_15295) - 3264179..3265057 (-) 879 WP_118119679.1 acyltransferase -
  DBX26_RS15325 (DBX26_15300) - 3265297..3266253 (+) 957 WP_118119681.1 DUF2860 domain-containing protein -
  DBX26_RS15330 (DBX26_15305) comM 3266285..3267808 (-) 1524 WP_118119683.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DBX26_RS15335 (DBX26_15310) ilvG 3268276..3269922 (+) 1647 WP_020333557.1 acetolactate synthase 2 catalytic subunit -
  DBX26_RS15340 (DBX26_15315) ilvM 3269934..3270218 (+) 285 WP_014233403.1 acetolactate synthase 2 small subunit -
  DBX26_RS15345 (DBX26_15320) ilvD 3270386..3272227 (+) 1842 WP_020333559.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55139.17 Da        Isoelectric Point: 8.7835

>NTDB_id=288755 DBX26_RS15330 WP_118119683.1 3266285..3267808(-) (comM) [Vibrio sp. dhg]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAASKFQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLHISPKRKTPQSHNRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQSEINEHNWKIRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTVVVKERVNDARQQMLNRSGKVNALLGSREIEAFCPLQKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGEER
IERSHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=288755 DBX26_RS15330 WP_118119683.1 3266285..3267808(-) (comM) [Vibrio sp. dhg]
ATGGGGCTGGCAATCATTCATAGTCGGGCAAGCGTCGGTGTACAAGCGCCGTCAGTTAGTGTGGAAGTACATATTAGTAA
CGGTATGCCGGGCTTTACTCTGGTTGGGCTGCCAGAAACCACGGTAAAAGAATCGAAAGATCGGGTACGCAGTGCCATTA
TCAATTCCAATTTTCAATTTCCTGCCAAGCGCATTACGGTCAACTTAGCTCCGGCGGATCTACCCAAAGAGGGTGGACGC
TTTGATTTACCCATTGCGCTGGGTATTTTGGCCGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAGTTAGCTTTGTCTGGAGGCTTAAGGCCAGTAAAAGGGGTGCTACCTGCCGCACTCGCTGCAAGCAAGTTTCAGC
GCCATTTGGTCGTGCCACATGTGAATGGTGATCAGGCGGCGCTGGTGGGTAAAGAACAGCATAAATCCGCTCAGTCGCTG
CTTGAGGTGTGTGCTGAATTGTGTGGTCAACATCGGCTTAATTTGCATATATCACCTAAGCGTAAAACACCACAAAGCCA
TAACCGAGATTTACAGGACATCATTGGCCAGCAACAGGGTAAGCGAGCGCTTGAGATCGCGGCGGCAGGTAACCATAACT
TATTATTTTTAGGACCACCCGGTACCGGAAAAACCATGTTAGCGTCGCGCTTATGCGATTTGTTACCTGAAATGAGTGAT
GATGAAGCGATGGAAACCGCATCCGTCGCGTCATTAACACAAAGCGAAATCAATGAGCATAACTGGAAGATACGGCCGTT
TCGTTCTCCACACCACTCCAGTTCGATGGCGGCTTTAGTCGGCGGAGGTTCGGTTCCGAGGCCGGGAGAAATTTCTCTGG
CTCACAATGGCTTGTTGTTTCTGGATGAAATGCCGGAGTTCGATCGTAAGGTGCTGGATTCGCTGCGAGAACCGCTGGAG
TCGGGCGAAATTATCATCTCTCGGGCTCAGGGCAAAACCCGATTTCCTGCCCGCTTTCAGCTGGTGGGCGCTCTCAACCC
CAGCCCGACTGGCTACTACGAAGGCAATCAGGCACGCACTAACCCACAAGCCATTCTGCGTTATTTAGGTCGTCTGTCGG
GACCGCTACTGGATCGATTCGATATGTCTCTGGAAATTCCTGCTTTGCCAAAGGGCACATTATCTGAGGGTGGGGACCGC
GGTGAGCCAACAGTGGTTGTGAAAGAGCGCGTGAATGACGCACGTCAGCAGATGTTAAATCGCAGCGGTAAGGTGAACGC
TTTGCTGGGTAGTCGTGAGATAGAAGCGTTTTGCCCATTACAAAAAAGTGATGCTGAGTTTCTGGAGACAGCCTTACACA
GACTGGGACTGTCCATTCGTGCGTATCACCGAATCATTAAAGTTGCCCGCACTATTGCTGATCTGGATGGGGAAGAGCGG
ATTGAGCGCTCCCATCTGGCGGAAGCCCTTGGATATCGAGCAATGGACCGATTACTGAAACAGCTTACTGCTCAGGCTGT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

93.886

100

0.939
  comM Vibrio cholerae strain A1552

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

64.314

100

0.647
  comM Legionella pneumophila str. Paris

49.698

98.028

0.487
  comM Legionella pneumophila strain ERS1305867

49.698

98.028

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.725

100

0.44

Multiple sequence alignment