Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBX26_RS13480 Genome accession   NZ_CP028943
Coordinates   2895747..2896286 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio sp. dhg     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2890747..2901286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS13460 (DBX26_13450) - 2891071..2891403 (-) 333 WP_020334514.1 hypothetical protein -
  DBX26_RS13465 (DBX26_13455) gspM 2891396..2892046 (-) 651 WP_014233114.1 type II secretion system protein GspM -
  DBX26_RS13470 (DBX26_13460) - 2892043..2893488 (-) 1446 WP_118119474.1 MSHA biogenesis protein MshI -
  DBX26_RS13475 (DBX26_13465) csrD 2893500..2895509 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  DBX26_RS13480 (DBX26_13470) ssb 2895747..2896286 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  DBX26_RS13485 (DBX26_13475) qstR 2896564..2897208 (+) 645 WP_118119476.1 LuxR C-terminal-related transcriptional regulator Regulator
  DBX26_RS13490 (DBX26_13480) galU 2897388..2898260 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DBX26_RS13495 (DBX26_13485) uvrA 2898409..2901231 (+) 2823 WP_118119478.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=288745 DBX26_RS13480 WP_014233117.1 2895747..2896286(-) (ssb) [Vibrio sp. dhg]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=288745 DBX26_RS13480 WP_014233117.1 2895747..2896286(-) (ssb) [Vibrio sp. dhg]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTAGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAAGCTCCAAAGCAATCTGCTCCACAG
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469

Multiple sequence alignment