Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   DBX26_RS13485 Genome accession   NZ_CP028943
Coordinates   2896564..2897208 (+) Length   214 a.a.
NCBI ID   WP_118119476.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2891564..2902208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS13470 (DBX26_13460) - 2892043..2893488 (-) 1446 WP_118119474.1 MSHA biogenesis protein MshI -
  DBX26_RS13475 (DBX26_13465) csrD 2893500..2895509 (-) 2010 WP_065297434.1 RNase E specificity factor CsrD -
  DBX26_RS13480 (DBX26_13470) ssb 2895747..2896286 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  DBX26_RS13485 (DBX26_13475) qstR 2896564..2897208 (+) 645 WP_118119476.1 LuxR C-terminal-related transcriptional regulator Regulator
  DBX26_RS13490 (DBX26_13480) galU 2897388..2898260 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  DBX26_RS13495 (DBX26_13485) uvrA 2898409..2901231 (+) 2823 WP_118119478.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24487.52 Da        Isoelectric Point: 9.9863

>NTDB_id=288746 DBX26_RS13485 WP_118119476.1 2896564..2897208(+) (qstR) [Vibrio sp. dhg]
MKKSAYARKLFLISMEENVPQKVAALEKYIEIGIPVISTDALMEAKPKHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYADESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=288746 DBX26_RS13485 WP_118119476.1 2896564..2897208(+) (qstR) [Vibrio sp. dhg]
ATGAAAAAATCAGCTTACGCCAGAAAGCTATTTCTGATCAGTATGGAAGAGAATGTGCCCCAAAAGGTAGCGGCACTGGA
GAAGTACATCGAGATCGGTATCCCAGTGATCTCGACGGATGCTTTAATGGAAGCAAAGCCGAAACATCGTAATAAAATCT
TACTCATCGATTTCAGTGAACATAAATCGCTTGTTCAGTCGATTAAGAATTTGCCACTGGTGTGGAAAAACTTTGAAACA
GTGATTTTTAATGTCCCAAAACGCCTGACTACGGATGAGCTGCTCTCTTTCGGCCAGCTTAAAGGCGTATTCTATGCCGA
CGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGCATCATTAATGGCCAAAACTGGTTACCTCGCAATGTGTCCAGCC
AGCTGCTTCACTACTACCGCAATGTGATCAATACCCATACCGCACCCGCGACCGTAGATCTTACCATTCGGGAATTACAA
GTGTTGCGCTGTCTTCAAAATGGGGCATCCAATAGCCGAATGGCAGAAGAGTTATTTGTGAGCGAGTTTACGATTAAGTC
TCACCTGTACCAGATTTTTAAAAAGCTCTCGGTGAAAAACCGCGTACAAGCGATTGCTTGGGCTGATCAGAATCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio campbellii strain DS40M4

87.85

100

0.879
  qstR Vibrio cholerae strain A1552

53.953

100

0.542

Multiple sequence alignment