Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EHC69_RS11935 Genome accession   NZ_CP034298
Coordinates   2388293..2390323 (-) Length   676 a.a.
NCBI ID   WP_114867723.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20160303005-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2383293..2395323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC69_RS11910 (EHC69_12040) moaB 2383388..2383900 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  EHC69_RS11915 (EHC69_12045) moaA 2384004..2384993 (-) 990 WP_005494502.1 GTP 3',8-cyclase MoaA -
  EHC69_RS11920 (EHC69_12050) - 2385289..2386182 (+) 894 WP_005482407.1 YvcK family protein -
  EHC69_RS11925 (EHC69_12055) luxU 2386259..2386597 (-) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  EHC69_RS11930 (EHC69_12060) luxO 2386600..2388003 (-) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EHC69_RS11935 (EHC69_12065) uvrB 2388293..2390323 (-) 2031 WP_114867723.1 excinuclease ABC subunit UvrB Machinery gene
  EHC69_RS11950 (EHC69_12080) rsxA 2391314..2391892 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  EHC69_RS11955 (EHC69_12085) rsxB 2391896..2392492 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -
  EHC69_RS11960 (EHC69_12090) rsxC 2392501..2395224 (+) 2724 WP_114867725.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77070.77 Da        Isoelectric Point: 4.8615

>NTDB_id=288607 EHC69_RS11935 WP_114867723.1 2388293..2390323(-) (uvrB) [Vibrio parahaemolyticus strain 20160303005-1]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLVHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=288607 EHC69_RS11935 WP_114867723.1 2388293..2390323(-) (uvrB) [Vibrio parahaemolyticus strain 20160303005-1]
ATGAGTAAAGTTTATGAACTGGTCTCTGAGTATCAACCGTCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAAGG
CTTAGATGCGGGGTTGGTGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGTCCTGCAATTTTACTGGCGCCAAATAAAACTCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCTTACTACGACTACTACCAACCAGAAGCGTACGTGCCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGGTTGTCTGCCACCAAAGCTTTACTCGAACGAA
AAGACGCCATCATCGTCGCTTCTGTCTCGGCCATTTATGGTTTGGGTGATCCCGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGACATGCTTCGTCGCCTAGCGGAACTTCAATACTCGCGTAATGATGTCGC
TTTTGAACGCGGTCAGTTCCGTGTTCGCGGCGAAGTGATCGACATATTCCCAGCTGAGTCTGACCAAGATGCTGTCCGTG
TTGAAATGTTTGATGATGAAGTGGATTGTATCAGTGTGTTTGATCCATTGACGGGTGTCGTGAAACAAAGAGATTTGCCG
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGTATTCTCGAAGCGATAGAAAGTATCAAAGTTGA
ACTCGAAGTACGCAAGAAACAATTACTAGAGAATAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTTGGTTTCTGTTCTGGTATAGAAAACTACTCACGTTATCTCAGTGGCCGTTCTGAGGGC
GAGCCGCCTCCAACCTTGTTCGATTACTTGCCTCATGATGGTTTACTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGTCCTCTAAAATTTGAAGAATTTGAGTCTCTTGCTCCGCAAACTATTTTCGTCTCGGCAACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGGTGAAATTGCGGATCAAGTCGTGCGTCCTACCGGCTTGCTGGATCCAATACTCGAAGTTCG
ACCAGTCGCGACTCAGGTCGATGATCTGTTGTCTGAAATTCGTATTCGTGCCGCCAAAGAGGAACGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAACATGATGTTCGTGTTCGTTATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTGCGCTTAGGTGAGTTCGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGCTGGTGGCAATTTTGGATGCCGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCTAGAAACATTGAGGGTAAAGCGATTCTCTATGCGGATAGTATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACCAATCGTCGTCGTGAGAAGCAGCAAGCGTACAACGAGAAAATGGGCATTACGCC
GCAAGCGTTAAAACGTAATATCAAGGATATTATGGAATTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTGCCACTGTCTAAAGTGGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCGGCGATGTACCAACATGCTCAGGATCTGGAATTCGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

Type III restriction enzyme, res subunit (ResIII)

(13-129)

UvrB interaction domain (UvrB_inter)

(159-250)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

UvrB/uvrC motif (UVR)

(636-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae R6

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae D39

55.856

98.521

0.55

Multiple sequence alignment