Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DB847_RS21620 Genome accession   NZ_CP028897
Coordinates   4612047..4613561 (-) Length   504 a.a.
NCBI ID   WP_108652522.1    Uniprot ID   -
Organism   Dongshaea marina strain DM2     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4607047..4618561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB847_RS21585 - 4607766..4608893 (-) 1128 WP_199911655.1 mechanosensitive ion channel family protein -
  DB847_RS21590 ftnA 4608949..4609500 (-) 552 WP_108652516.1 non-heme ferritin -
  DB847_RS21595 - 4609721..4610341 (+) 621 WP_159084784.1 hypothetical protein -
  DB847_RS21600 - 4610461..4611066 (+) 606 WP_108652518.1 hypothetical protein -
  DB847_RS21605 - 4611072..4611521 (+) 450 WP_234418648.1 YdbH domain-containing protein -
  DB847_RS21610 - 4611518..4611706 (+) 189 WP_108652520.1 YnbE family lipoprotein -
  DB847_RS21615 - 4611720..4612034 (+) 315 WP_108652521.1 YdbL family protein -
  DB847_RS21620 comM 4612047..4613561 (-) 1515 WP_108652522.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DB847_RS21625 - 4613685..4614878 (-) 1194 WP_108652523.1 heme biosynthesis HemY N-terminal domain-containing protein -
  DB847_RS21630 - 4614772..4615971 (-) 1200 WP_108652524.1 uroporphyrinogen-III C-methyltransferase -
  DB847_RS21635 - 4615968..4616732 (-) 765 WP_108652525.1 uroporphyrinogen-III synthase -
  DB847_RS21640 hemC 4616725..4617660 (-) 936 WP_108652526.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54867.61 Da        Isoelectric Point: 6.8172

>NTDB_id=288340 DB847_RS21620 WP_108652522.1 4612047..4613561(-) (comM) [Dongshaea marina strain DM2]
MSLSIINTRACLGVGAPEITVETHLSAGLPGFAIVGLPEASVREARDRVRSALLNSGFTFPSQKITVNLAPADLPKQGGR
YDLAVALGILAASEQIPASKLSRYEFLGELALSGEIRPVHGALAATLAAKSANRELILPVENGSESACLQDTSVRTATHL
LEVTGFLNGCTELNQPLLEEDSPPELLSDLRDVIGQQHAKRALEIAAAGAHHLLLLGPPGTGKSMLAQRLTGLLPELSEE
QARERAVIHSAAGHPVTSYHWYQRPFRAPHHSASPIALAGGGTIPRPGEISLAHHGVLFLDELPEFERRALEILRQPLES
GDITISRSAGQLTFPARFQLIAAMNPCPGGYYRGERRRDSPEQILRYLRKLSGPLLDRFDLSVEVAALERGELTHPRAEG
ESSAEVRERILAAQQRMVSRAGKLNAHLSAAELKQYCTLSEQESLFLENAIHKLGLSVRAWHRILKVSRTIADLSDEPQI
AHEHLAEALGYRAMERLLQELSRY

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=288340 DB847_RS21620 WP_108652522.1 4612047..4613561(-) (comM) [Dongshaea marina strain DM2]
ATGTCTCTTTCGATTATCAATACCCGGGCTTGCCTGGGGGTAGGGGCCCCCGAAATAACTGTCGAAACCCACCTGTCGGC
GGGGCTTCCCGGCTTTGCAATCGTCGGATTACCGGAAGCTTCGGTTCGTGAGGCCCGGGACCGGGTGCGCAGCGCCCTGC
TGAACTCCGGCTTTACCTTCCCTTCGCAGAAAATTACCGTAAATCTGGCCCCGGCCGATCTCCCCAAGCAGGGAGGGCGC
TATGATCTGGCGGTTGCCCTGGGGATCCTGGCTGCTTCTGAGCAGATCCCCGCCAGCAAGCTTTCCCGCTATGAGTTTCT
CGGAGAGCTTGCCCTGTCCGGCGAAATCCGTCCGGTCCATGGTGCCCTGGCTGCGACTCTGGCCGCAAAAAGTGCCAATC
GGGAGCTTATCCTGCCCGTCGAAAATGGTAGTGAGTCTGCCTGCCTGCAAGATACCTCGGTACGAACCGCGACCCATCTG
TTGGAGGTCACCGGCTTTCTCAACGGCTGCACCGAGCTTAATCAACCTCTGCTCGAAGAGGACTCACCACCAGAGCTTCT
GTCGGATCTCAGGGATGTCATCGGTCAGCAGCATGCCAAGCGTGCGCTGGAGATTGCTGCAGCCGGAGCCCACCACCTGT
TACTGCTTGGGCCTCCGGGCACCGGCAAGAGTATGCTGGCTCAGCGATTGACCGGATTGCTTCCTGAGCTCAGTGAAGAG
CAGGCTCGGGAGCGAGCCGTGATCCACAGTGCGGCTGGCCACCCTGTCACCTCTTACCATTGGTATCAAAGGCCGTTCAG
GGCGCCTCATCATAGCGCCTCACCCATAGCACTGGCGGGAGGGGGAACCATTCCACGCCCTGGTGAGATTTCATTAGCTC
ATCATGGAGTGCTGTTTCTGGATGAGTTGCCTGAGTTCGAACGCCGGGCCCTTGAGATCTTGAGGCAACCCCTGGAAAGT
GGCGACATCACCATCTCTCGCTCGGCCGGACAGCTCACCTTTCCTGCCCGTTTTCAGCTGATTGCGGCGATGAACCCCTG
TCCCGGTGGTTATTATCGTGGAGAGCGGCGCCGGGACTCGCCGGAGCAGATCCTGCGCTACCTGCGTAAACTCTCCGGGC
CGCTGTTGGATCGCTTTGATCTGAGTGTCGAAGTTGCCGCACTGGAGCGCGGAGAACTGACTCACCCCCGAGCCGAGGGG
GAGTCATCGGCCGAGGTACGCGAGAGGATCCTGGCGGCACAGCAGCGGATGGTAAGCAGGGCCGGCAAGTTAAATGCACA
CCTGAGCGCGGCCGAGCTCAAACAGTATTGCACCCTGAGTGAGCAGGAGAGCCTGTTTTTGGAGAACGCCATCCATAAGC
TGGGGTTATCGGTGCGGGCCTGGCACAGGATCCTCAAGGTTTCCCGAACCATAGCCGATCTGAGCGATGAGCCACAGATA
GCTCATGAGCACCTGGCTGAGGCCCTGGGATATCGGGCGATGGAGCGGCTGCTTCAGGAGCTGAGCCGCTATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.939

100

0.595
  comM Vibrio cholerae strain A1552

59.208

100

0.593
  comM Glaesserella parasuis strain SC1401

57.677

100

0.581
  comM Vibrio campbellii strain DS40M4

57.228

100

0.573
  comM Legionella pneumophila str. Paris

50.996

99.603

0.508
  comM Legionella pneumophila strain ERS1305867

50.996

99.603

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.291

99.008

0.448

Multiple sequence alignment