Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   C1A39_RS01645 Genome accession   NZ_CP028896
Coordinates   298713..299402 (+) Length   229 a.a.
NCBI ID   WP_002949638.1    Uniprot ID   A0A060BFD8
Organism   Streptococcus thermophilus strain CS5     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 293713..304402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1A39_RS09775 (C1A39_01635) - 294679..294849 (+) 171 Protein_269 ascorbate 6-phosphate lactonase -
  C1A39_RS01625 (C1A39_01640) - 294866..295537 (-) 672 WP_002946492.1 TrkA family potassium uptake protein -
  C1A39_RS01630 (C1A39_01645) - 295577..296941 (-) 1365 WP_276529255.1 potassium transporter TrkG -
  C1A39_RS01635 (C1A39_01650) rsmG 297011..297724 (-) 714 WP_002946490.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  C1A39_RS01640 (C1A39_01655) - 298021..298557 (+) 537 WP_014607968.1 YceD family protein -
  C1A39_RS01645 (C1A39_01660) covR 298713..299402 (+) 690 WP_002949638.1 response regulator transcription factor Regulator
  C1A39_RS01650 (C1A39_01665) covS 299399..300916 (+) 1518 WP_002949640.1 HAMP domain-containing histidine kinase Regulator
  C1A39_RS01655 (C1A39_01670) nrdR 301038..301517 (+) 480 WP_011680738.1 transcriptional regulator NrdR -
  C1A39_RS01660 (C1A39_01675) - 301514..302689 (+) 1176 WP_011680739.1 DnaD domain protein -
  C1A39_RS01665 (C1A39_01680) dnaI 302693..303595 (+) 903 WP_014607971.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26655.77 Da        Isoelectric Point: 4.7059

>NTDB_id=288273 C1A39_RS01645 WP_002949638.1 298713..299402(+) (covR) [Streptococcus thermophilus strain CS5]
MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFEVTRRLQQEKDTYIMMMT
ARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDIEATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKRE
FDLLNTLLSNMNQVMTREELLLQVWKYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIRER

Nucleotide


Download         Length: 690 bp        

>NTDB_id=288273 C1A39_RS01645 WP_002949638.1 298713..299402(+) (covR) [Streptococcus thermophilus strain CS5]
ATGAGCAAACGCATTTTGATTGTTGAAGATGAGAGAAACCTTGCTCGTTTTGTCTCTCTTGAACTTCAACACGAAGGATA
CGACGTTGTGACAGCGGACAACGGACGCGAAGGACTTGAAATGGCACTTGAGAAAGATTTCGATCTTATTCTCTTGGACC
TTATGTTGCCTGAGATGGACGGTTTCGAAGTGACACGTCGTCTCCAACAAGAAAAAGATACTTATATTATGATGATGACA
GCTCGCGACTCAATCATGGATATTGTTGCTGGTTTGGATCGTGGAGCTGATGACTATATTATAAAACCATTTGCGATTGA
AGAACTGTTGGCACGTATTCGTGCAACTTTCCGTCGTCAAGATATCGAAGCTACTAAGAAGGCACCAGCTAAAGCGTCAA
CCTATCGCGATTTAAAATTGGATGTTCAAAACCGTGCAGTTGTTCGCGGTGATGAGGTAATTCCATTGACAAAACGTGAG
TTTGATTTGTTGAACACACTTTTAAGCAATATGAACCAAGTAATGACCCGTGAGGAACTCTTGCTTCAAGTCTGGAAATA
TGATGACGTAATTGAAACAAACGTTGTAGATGTTTATATTCGTTACTTACGTGGGAAAATCGACATTCCAGGTAAGGAAT
CATACATTCAAACAGTACGAGGGATGGGTTACGTTATCCGTGAAAGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060BFD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

96.07

100

0.961
  covR Lactococcus lactis subsp. lactis strain DGCC12653

67.544

99.563

0.672
  vicR Streptococcus mutans UA159

45.259

100

0.459
  micA Streptococcus pneumoniae Cp1015

43.913

100

0.441

Multiple sequence alignment