Detailed information NTG0287971

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: EIA51_RS02905
• Genome accession: NZ_CP034110
• Coordinates: 546814..547470 (+)
• Length: 218 a.a.
• NCBI ID: WP_017805670.1
• Uniprot ID: A0A0F5F103
• Organism: Avibacterium paragallinarum strain FARPER-174
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 541814..552470

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EIA51_RS02875 (EIA51_02875)	-	542336..543295 (+)	960	WP_035687757.1	ABC transporter permease	-
EIA51_RS02880 (EIA51_02880)	crp	543387..543998 (-)	612	WP_110479416.1	cAMP-activated global transcriptional regulator CRP	Regulator
EIA51_RS02885 (EIA51_02885)	-	544051..544272 (-)	222	WP_017805666.1	YheU family protein	-
EIA51_RS02890 (EIA51_02890)	slmA	544294..544920 (-)	627	WP_174758218.1	nucleoid occlusion factor SlmA	-
EIA51_RS02895 (EIA51_02895)	dut	544958..545413 (-)	456	WP_035687762.1	dUTP diphosphatase	-
EIA51_RS02900 (EIA51_02900)	coaBC	545415..546647 (-)	1233	WP_035687765.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
EIA51_RS02905 (EIA51_02905)	radC	546814..547470 (+)	657	WP_017805670.1	RadC family protein	Machinery gene
EIA51_RS02910 (EIA51_02910)	rpmB	547690..547926 (+)	237	WP_011608297.1	50S ribosomal protein L28	-
EIA51_RS02915 (EIA51_02915)	rpmG	547938..548108 (+)	171	WP_005542835.1	50S ribosomal protein L33	-
EIA51_RS02920 (EIA51_02920)	mutM	548263..549075 (+)	813	WP_035687768.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
EIA51_RS02925 (EIA51_02925)	nanA	549140..550018 (-)	879	WP_017805672.1	N-acetylneuraminate lyase	-
EIA51_RS02930 (EIA51_02930)	-	550037..550906 (-)	870	WP_046097299.1	MurR/RpiR family transcriptional regulator	-
EIA51_RS02935 (EIA51_02935)	nanQ	550922..551392 (-)	471	WP_035687772.1	N-acetylneuraminate anomerase	-
EIA51_RS02940 (EIA51_02940)	-	551406..552287 (-)	882	WP_035687775.1	N-acetylmannosamine kinase	-

Sequence

Protein

• Length: 218 a.a.
• Molecular weight: 24877.96 Da
• Isoelectric Point: 6.2312

>NTDB_id=287971 EIA51_RS02905 WP_017805670.1 546814..547470(+) (radC) [Avibacterium paragallinarum strain FARPER-174]
MSELMPREKLLQWGAEALDDSELLAIFLRTGIKNCSVMELSRKVIAHFGSLRQLICADQQHFCAVKGLGITQFIQLQACT
EMTKRYLLQELEMAQAFTSPEIVRMYLQTELENKEREVFWVLFLDNQHRLIKKEEMFLGTINSAAVYPREIVKTALFCNA
AAIILAHNHPSGIAEPSQADRNITEKIQQAAELMEVRVLDHFVIGKGCYVSFSEKGWL

Nucleotide

• Length: 657 bp

>NTDB_id=287971 EIA51_RS02905 WP_017805670.1 546814..547470(+) (radC) [Avibacterium paragallinarum strain FARPER-174]
ATGTCTGAATTAATGCCACGAGAAAAACTCTTGCAATGGGGGGCGGAAGCCCTTGATGACAGCGAATTATTAGCGATCTT
TTTACGCACGGGGATCAAAAACTGCTCCGTAATGGAATTATCCCGCAAGGTGATCGCCCATTTTGGTTCGCTACGCCAGT
TAATCTGTGCGGATCAACAACATTTCTGTGCAGTCAAAGGGTTAGGCATCACACAATTTATTCAGCTTCAAGCCTGCACG
GAAATGACGAAACGCTATTTATTGCAAGAATTAGAAATGGCACAAGCCTTCACTAGCCCTGAGATTGTGCGAATGTATCT
GCAAACGGAGCTGGAAAACAAAGAGCGGGAAGTTTTTTGGGTACTTTTTTTAGATAATCAGCATCGCCTAATAAAAAAAG
AAGAAATGTTTCTCGGCACGATCAACAGTGCAGCGGTGTATCCTCGTGAGATCGTAAAAACGGCATTATTTTGCAATGCG
GCAGCGATTATTTTGGCTCATAATCATCCCTCAGGAATTGCTGAGCCAAGCCAAGCAGATCGTAATATTACAGAGAAAAT
TCAGCAAGCGGCGGAGCTGATGGAGGTTCGCGTTTTGGATCATTTTGTTATTGGAAAAGGCTGCTATGTTTCCTTTAGTG
AGAAAGGGTGGCTATAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (6-71)

• RadC-like JAB domain (RadC) (97-216)

3D structure

• AlphaFold DB: A0A0F5F103

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	67.281	99.541	0.67
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	38.14	98.624	0.376
radC	Streptococcus pneumoniae TIGR4	37.963	99.083	0.376
radC	Streptococcus pneumoniae R6	37.5	99.083	0.372
radC	Streptococcus pneumoniae D39	37.5	99.083	0.372