Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EIA51_RS02880 Genome accession   NZ_CP034110
Coordinates   543387..543998 (-) Length   203 a.a.
NCBI ID   WP_110479416.1    Uniprot ID   A0A2V4EWA7
Organism   Avibacterium paragallinarum strain FARPER-174     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 538387..548998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EIA51_RS02860 (EIA51_02860) - 538698..539633 (+) 936 WP_035687749.1 substrate-binding domain-containing protein -
  EIA51_RS02865 (EIA51_02865) - 539741..540685 (+) 945 WP_124994799.1 sugar ABC transporter substrate-binding protein -
  EIA51_RS02870 (EIA51_02870) - 540769..542283 (+) 1515 WP_035687755.1 sugar ABC transporter ATP-binding protein -
  EIA51_RS02875 (EIA51_02875) - 542336..543295 (+) 960 WP_035687757.1 ABC transporter permease -
  EIA51_RS02880 (EIA51_02880) crp 543387..543998 (-) 612 WP_110479416.1 cAMP-activated global transcriptional regulator CRP Regulator
  EIA51_RS02885 (EIA51_02885) - 544051..544272 (-) 222 WP_017805666.1 YheU family protein -
  EIA51_RS02890 (EIA51_02890) slmA 544294..544920 (-) 627 WP_174758218.1 nucleoid occlusion factor SlmA -
  EIA51_RS02895 (EIA51_02895) dut 544958..545413 (-) 456 WP_035687762.1 dUTP diphosphatase -
  EIA51_RS02900 (EIA51_02900) coaBC 545415..546647 (-) 1233 WP_035687765.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  EIA51_RS02905 (EIA51_02905) radC 546814..547470 (+) 657 WP_017805670.1 RadC family protein Machinery gene
  EIA51_RS02910 (EIA51_02910) rpmB 547690..547926 (+) 237 WP_011608297.1 50S ribosomal protein L28 -
  EIA51_RS02915 (EIA51_02915) rpmG 547938..548108 (+) 171 WP_005542835.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23085.67 Da        Isoelectric Point: 7.4415

>NTDB_id=287970 EIA51_RS02880 WP_110479416.1 543387..543998(-) (crp) [Avibacterium paragallinarum strain FARPER-174]
MDPTLEWFLSHCHIHKYPTKSSIIHAGEKAETLYYLIRGSVAVLVKDEDGKEMILTYLNQGDFFGEAGLFEEGQERSAWV
ETKTTCEVAEISYKKFRQLIQVNPEILMYLSGQLARRLQNTSKQVRNLAFLDVAGRIAQTLLNLAKMPDAMTHPEGMQIK
ITRQEIGQMVGCSRETVGRILKMLEDQHLISAHGKTIVVYNSR

Nucleotide


Download         Length: 612 bp        

>NTDB_id=287970 EIA51_RS02880 WP_110479416.1 543387..543998(-) (crp) [Avibacterium paragallinarum strain FARPER-174]
ATGGATCCAACATTAGAATGGTTTTTATCTCACTGTCATATTCACAAATACCCTACCAAAAGCTCGATCATTCATGCTGG
AGAAAAAGCTGAAACATTGTATTACTTAATCCGGGGCTCGGTTGCAGTATTAGTTAAAGATGAAGATGGGAAAGAGATGA
TCCTGACTTATCTAAATCAAGGAGATTTTTTTGGTGAAGCCGGTCTGTTTGAAGAAGGTCAAGAACGTTCTGCTTGGGTA
GAAACAAAAACAACTTGTGAAGTGGCTGAAATCTCTTATAAAAAGTTTCGTCAACTTATTCAAGTAAATCCTGAAATTTT
GATGTATTTATCAGGTCAGCTTGCCCGCCGTTTACAAAATACCTCAAAGCAAGTTCGTAATCTTGCTTTCTTAGATGTTG
CTGGGCGTATTGCTCAAACATTATTAAATCTTGCTAAAATGCCAGATGCAATGACGCATCCAGAAGGAATGCAAATAAAA
ATTACCCGTCAAGAAATCGGTCAGATGGTTGGTTGTTCTAGAGAAACAGTAGGACGTATTCTGAAAATGCTAGAGGATCA
GCACCTTATTTCTGCTCACGGTAAGACCATTGTTGTCTATAATTCAAGATAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(16-102)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(135-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V4EWA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

83.663

99.507

0.833
  crp Haemophilus influenzae Rd KW20

80.198

99.507

0.798
  crp Acinetobacter baumannii D1279779

46.734

98.03

0.458