Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CLC_RS17290 Genome accession   NC_009698
Coordinates   3743748..3744194 (-) Length   148 a.a.
NCBI ID   WP_012099585.1    Uniprot ID   -
Organism   Clostridium botulinum A str. Hall     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3738748..3749194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC_RS17265 (CLC_3621) rplI 3739577..3740020 (-) 444 WP_012048442.1 50S ribosomal protein L9 -
  CLC_RS17270 (CLC_3622) - 3740020..3742005 (-) 1986 WP_003397329.1 DHH family phosphoesterase -
  CLC_RS17275 (CLC_3623) - 3742006..3743010 (-) 1005 WP_012048443.1 YybS family protein -
  CLC_RS17280 (CLC_3624) - 3743022..3743339 (-) 318 WP_003359330.1 MazG-like family protein -
  CLC_RS17285 (CLC_3625) rpsR 3743487..3743729 (-) 243 WP_003359407.1 30S ribosomal protein S18 -
  CLC_RS17290 (CLC_3626) ssbA 3743748..3744194 (-) 447 WP_012099585.1 single-stranded DNA-binding protein Machinery gene
  CLC_RS17295 (CLC_3627) rpsF 3744210..3744494 (-) 285 WP_012048444.1 30S ribosomal protein S6 -
  CLC_RS17300 (CLC_3628) - 3744600..3745748 (-) 1149 WP_003359361.1 double-cubane-cluster-containing anaerobic reductase -
  CLC_RS17305 (CLC_3629) - 3746022..3746219 (-) 198 WP_003398916.1 DUF951 domain-containing protein -
  CLC_RS17310 (CLC_3630) - 3746235..3747104 (-) 870 WP_012048445.1 mechanosensitive ion channel family protein -
  CLC_RS17315 (CLC_3631) - 3747111..3747356 (-) 246 WP_003361815.1 DUF3343 domain-containing protein -
  CLC_RS17320 (CLC_3632) - 3747547..3748701 (+) 1155 WP_012048446.1 aminotransferase class V-fold PLP-dependent enzyme -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16355.18 Da        Isoelectric Point: 4.7821

>NTDB_id=28725 CLC_RS17290 WP_012099585.1 3743748..3744194(-) (ssbA) [Clostridium botulinum A str. Hall]
MNKVVLIGRLTKDPELKFTPGNGTAVTTFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTRRYVTEVIAEEVKFLEWGNKPTTDSTYNNGSEPSYQSGQGFGNGNSFDDDIIPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=28725 CLC_RS17290 WP_012099585.1 3743748..3744194(-) (ssbA) [Clostridium botulinum A str. Hall]
ATGAATAAAGTTGTTTTGATAGGTAGATTAACCAAAGATCCTGAGTTAAAATTTACTCCAGGAAACGGGACAGCAGTTAC
CACCTTTACTTTGGCTGTAGATAGAAGATTTTCAAAAGATGGTCAGAGAGAAGCAGATTTCATCCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAACTACATGAGTAAAGGAAAACTTATGGGGGTTAGTGGTAGAATTCAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAGAAGATATGTAACAGAAGTCATAGCGGAAGAAGTTAAATTTCTTGAGTGGGGCAATAA
GCCTACAACGGATTCAACATATAATAATGGGTCAGAACCAAGTTATCAATCAGGCCAAGGCTTTGGAAATGGAAACAGTT
TTGACGACGATATAATTCCAGTGGATGATGGAGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.561
  ssb Latilactobacillus sakei subsp. sakei 23K

46.269

90.541

0.419
  ssb Neisseria meningitidis MC58

33.526

100

0.392
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.369

69.595

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.369

69.595

0.378

Multiple sequence alignment