Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C7T95_RS01390 Genome accession   NZ_CP028730
Coordinates   314821..316347 (-) Length   508 a.a.
NCBI ID   WP_107946301.1    Uniprot ID   -
Organism   Shewanella baltica strain 128     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 309821..321347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7T95_RS01365 prpB 310489..311367 (-) 879 WP_107946297.1 methylisocitrate lyase -
  C7T95_RS01370 - 311419..312186 (-) 768 WP_107946298.1 GntR family transcriptional regulator -
  C7T95_RS01375 - 312553..312849 (+) 297 Protein_260 DUF523 domain-containing protein -
  C7T95_RS01380 - 312857..313801 (-) 945 WP_107946299.1 acyltransferase -
  C7T95_RS01385 - 313809..314711 (-) 903 WP_107946300.1 acyltransferase -
  C7T95_RS01390 comM 314821..316347 (-) 1527 WP_107946301.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C7T95_RS01395 - 316912..317757 (-) 846 WP_234420987.1 DUF3037 domain-containing protein -
  C7T95_RS01400 - 317741..318463 (-) 723 WP_107946303.1 HipA family kinase -
  C7T95_RS01405 - 319345..320373 (+) 1029 Protein_266 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55481.82 Da        Isoelectric Point: 8.3615

>NTDB_id=286812 C7T95_RS01390 WP_107946301.1 314821..316347(-) (comM) [Shewanella baltica strain 128]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPLNSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRSPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKRARELQLARSGVLNSELTGKQLKRFSGISDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQA
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=286812 C7T95_RS01390 WP_107946301.1 314821..316347(-) (comM) [Shewanella baltica strain 128]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCGCCCCAAGTCACAGTTGAAGTGCATCTCAGCAA
TGGCTTACCGGCATTTAATCTGGTGGGATTACCCGAAGCGTCGGTAAAAGAAGCCCGTGAGCGAGTACGCAGCGCGCTGA
TCAATGCGGGATTCGAGTTTCCAATGCGGCGGATAACCGTTAACCTCGCGCCAGCAGATTTACCTAAACAAGGTGGCCGC
TACGACTTACCCATAGCCGTAGGCATATTGGCTGCATCAGAACAAATCCCCCTTAATAGCCTAAAAAATCTCGAGTTTGT
CGGTGAACTGGCATTGTCTGGACACATACGTTATTGCCAAGGATTATTACCGGCGATTATCGCCGCAAAGCGCCAAGACC
ATACCTTGATATTGCCGCTGGATAATCGCCACGATGCCGAGTTAGTCGGCTATCCCAATGTGTTGTTTGGCTCGCACCTT
CAGAGCTTAGCCGCTTATTTACAGGGGCAAAATCAGCTGCCAACGTTAGCGCCGCAATTAGAATGGATCAGCCAAGAGAC
GCCTGAGTCCCATACCTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCGGCGGGAA
ACCATAACCTCCTGATGCTTGGCCCGCCAGGTACAGGCAAGACCATGCTTGCCAGCCGTATGATGGCGCTATTGCCCGCG
CTTAATTATGAGGAAGCATTAGAAGTGGCGGCGATTCATTCCGTTGCTGGACTCGACATTAAACCGCAGCATTTTTTGCA
GCGACCCTTTCGCTCGCCGCACCACACGAGTTCGTCGATATCCCTCGTGGGTGGCGGCAGTATTCCAAAACCCGGTGAAA
TTTCCCTCGCCCACCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCGCGTAAAGTCTTAGATTGCCTGCGCGAG
CCGATGGAGACCGGCGAAGTAGTGATTTCCCGCGCCGCCGCAAAGCTGACATTTTTGAGTCGCTTCCAACTAATCGCGGC
GATGAATCCCAGCCCGAGCGGCGATATCGATAGCCAACACAGATCGAGCCCCGAACAGATTCAACGTTATCTCTCAAGGC
TTTCTGGCCCATTTCTCGACCGCTTCGATTTAACCATTGAAGTGCCCAAACTGCCCGCGGGTACCTTGACTCAAGCTGCG
CCGCAAACAGAAACCAGCCAAGATATCGCCAAGCGGGTCAAAAGGGCGCGTGAGCTGCAACTCGCCCGTTCAGGCGTGCT
CAATAGCGAACTCACAGGGAAACAATTGAAACGCTTTAGCGGGATCAGTGATGCTGATTTAGTGTTTTTGGAACAAAGCG
TGGTAAAACTTGGCCTCTCGGTTCGCAGCTTCCACCGTATACAAAGGGTGGCGCGTACTATTGCCGATCTGGAACAAGCG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCTATGGATAGATTACTCGCCCGCTTATCTCAGCA
ATATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.667

100

0.569
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Haemophilus influenzae Rd KW20

55.906

100

0.559
  comM Vibrio campbellii strain DS40M4

55.403

100

0.555
  comM Legionella pneumophila str. Paris

46.063

100

0.461
  comM Legionella pneumophila strain ERS1305867

46.063

100

0.461
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.75

97.638

0.427

Multiple sequence alignment