Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SHEW185_RS20765 Genome accession   NC_009665
Coordinates   4794935..4796461 (+) Length   508 a.a.
NCBI ID   WP_012090439.1    Uniprot ID   -
Organism   Shewanella baltica OS185     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4789935..4801461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHEW185_RS20755 (Shew185_4014) - 4791543..4793327 (-) 1785 WP_041411513.1 GGDEF domain-containing protein -
  SHEW185_RS20760 (Shew185_4015) - 4793373..4794401 (-) 1029 WP_012090438.1 ABC transporter substrate-binding protein -
  SHEW185_RS20765 (Shew185_4016) comM 4794935..4796461 (+) 1527 WP_012090439.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SHEW185_RS20770 (Shew185_4017) - 4796571..4797473 (+) 903 WP_012090440.1 acyltransferase -
  SHEW185_RS20775 (Shew185_4018) - 4797481..4798425 (+) 945 WP_012090441.1 acyltransferase -
  SHEW185_RS20780 (Shew185_4019) - 4798444..4798938 (-) 495 WP_012090442.1 DUF523 domain-containing protein -
  SHEW185_RS20785 (Shew185_4020) - 4799239..4800006 (+) 768 WP_012090443.1 GntR family transcriptional regulator -
  SHEW185_RS20790 (Shew185_4021) prpB 4800064..4800942 (+) 879 WP_006083473.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55434.85 Da        Isoelectric Point: 8.1069

>NTDB_id=28613 SHEW185_RS20765 WP_012090439.1 4794935..4796461(+) (comM) [Shewanella baltica OS185]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFNLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPLNSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKLARELQLARAGVLNSELTGKQLKRFSGLSDADLVFLEQSVVKLGLSVRSFHRLQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=28613 SHEW185_RS20765 WP_012090439.1 4794935..4796461(+) (comM) [Shewanella baltica OS185]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCGCCCCAAGTCACAGTTGAGGTGCATCTGAGCAA
TGGCTTACCGGCATTTAATCTGGTGGGATTACCCGAAGCGTCGGTAAAAGAAGCCCGCGAGCGGGTGCGCAGCGCACTGA
TCAATGCGGGATTCGAGTTTCCAATGCGGCGGATAACCGTTAACCTCGCGCCAGCAGATTTACCTAAACAAGGTGGCCGC
TACGACTTACCCATAGCCGTAGGCATATTGGCTGCATCAGAACAAATCCCCCTTAATAGCCTAAAAAATCTCGAGTTTGT
CGGTGAACTGGCATTGTCTGGGCACATACGTTATTGCCAAGGATTATTACCGGCGATTATCGCCGCAAAGCGCCAAGACC
ATACCTTGATATTGCCGCTGGATAATCGCCACGATGCCGAGTTAGTCGGCTATCCCAATGTGTTGTTTGGCTCGCACCTG
CAGAGTCTGGCCGCCTATTTACAGGGGCAAAACCAACTGCCAACGTTAGCGCCGCAATTAGAATGGATAAGCCAAGAGAC
GCCTGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCGGCGGGAA
ACCATAACCTCTTGATGCTTGGGCCGCCGGGTACTGGCAAAACCATGCTTGCCAGCCGCATGATGGCGCTATTGCCCGCG
CTTAATTATGAAGAAGCATTAGAAGTAGCAGCAATTCATTCCGTTGCTGGACTCGACATTAAACCGCAGCATTTTTTACA
GCGACCCTTTAGGGCGCCGCACCACACGAGTTCTTCGATTTCCCTCGTGGGCGGTGGCAGTATTCCAAAACCCGGTGAAA
TCTCCCTCGCCCATCGTGGCGTGCTGTTTTTAGATGAAGTGGCTGAATTTCCTCGAAAAGTCTTAGATTGCCTGCGCGAA
CCGATGGAAACCGGCGAAGTGGTGATTTCCCGCGCCGCCGCTAAGCTAACATTCTTGAGTCGCTTCCAATTAATCGCGGC
GATGAATCCCAGCCCGAGTGGCGATATCGATAGCCAACACAGATCGAGCCCAGAACAAATTCAGCGTTATCTTTCGCGGC
TTTCAGGCCCGTTTCTCGACCGTTTCGATTTAACCATTGAAGTCCCCAAACTCCCCGCGGGTACATTAACTCAAGCCGCG
CCGCAGACAGAAACCAGCCAAGATATCGCCAAACGAGTGAAACTAGCGCGTGAGCTGCAACTCGCCCGCGCTGGCGTGCT
CAATAGTGAACTCACAGGGAAACAATTGAAACGCTTTAGCGGACTCAGTGACGCTGATTTAGTGTTTTTGGAGCAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGTTTTCATCGTTTACAAAGAGTTGCGCGCACGATTGCCGATCTGGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCCATGGATAGATTACTCGCCCGCTTATCCCAGCA
ATATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.667

100

0.569
  comM Haemophilus influenzae Rd KW20

56.299

100

0.563
  comM Glaesserella parasuis strain SC1401

56.016

99.803

0.559
  comM Vibrio campbellii strain DS40M4

55.403

100

0.555
  comM Legionella pneumophila str. Paris

46.758

100

0.469
  comM Legionella pneumophila strain ERS1305867

46.758

100

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.548

97.638

0.425

Multiple sequence alignment