Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPG27_RS05000 Genome accession   NC_011333
Coordinates   1048735..1048995 (+) Length   86 a.a.
NCBI ID   WP_000602757.1    Uniprot ID   B5Z817
Organism   Helicobacter pylori G27     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1043735..1053995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG27_RS04985 (HPG27_959) - 1045764..1046528 (+) 765 WP_000667736.1 hypothetical protein -
  HPG27_RS04990 (HPG27_960) - 1046540..1048442 (+) 1903 Protein_973 hypothetical protein -
  HPG27_RS04995 (HPG27_961) - 1048432..1048734 (+) 303 WP_000649840.1 TrbC/VirB2 family protein -
  HPG27_RS05000 (HPG27_962) comB3 1048735..1048995 (+) 261 WP_000602757.1 hypothetical protein Machinery gene
  HPG27_RS08660 (HPG27_963) - 1049008..1051507 (+) 2500 Protein_976 VirB4 family type IV secretion system protein -
  HPG27_RS05010 (HPG27_964) - 1051500..1053434 (+) 1935 WP_041201379.1 type IA DNA topoisomerase -
  HPG27_RS08745 - 1053434..1053562 (+) 129 WP_001185489.1 hypothetical protein -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 10140.01 Da        Isoelectric Point: 4.6082

>NTDB_id=28613 HPG27_RS05000 WP_000602757.1 1048735..1048995(+) (comB3) [Helicobacter pylori G27]
MILNYVETINVREISKKEKFLKLNMNSWIISFLSASFLFVWSLLYGVVLLVALVTMFYILEFFDEDITNIILANLTLKND
TKEYYA

Nucleotide


Download         Length: 261 bp        

>NTDB_id=28613 HPG27_RS05000 WP_000602757.1 1048735..1048995(+) (comB3) [Helicobacter pylori G27]
ATGATTTTAAATTATGTAGAGACCATCAATGTTAGAGAAATATCTAAAAAAGAGAAGTTTTTAAAGCTTAATATGAATAG
TTGGATCATTTCTTTTTTGAGTGCTTCTTTCTTGTTTGTGTGGTCTTTATTATATGGCGTGGTGCTATTGGTGGCATTAG
TAACAATGTTTTACATATTAGAATTTTTTGATGAAGATATTACAAACATTATCTTAGCAAACCTAACGCTAAAAAATGAC
ACTAAAGAATATTATGCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z817

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

44.828

100

0.453

Multiple sequence alignment