Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPG27_RS03865 Genome accession   NC_011333
Coordinates   818019..819539 (-) Length   506 a.a.
NCBI ID   WP_000611016.1    Uniprot ID   B5Z7F4
Organism   Helicobacter pylori G27     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 813019..824539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPG27_RS03855 (HPG27_746) - 814589..815893 (-) 1305 WP_000548849.1 restriction endonuclease subunit S -
  HPG27_RS03860 (HPG27_747) - 815934..817994 (-) 2061 WP_001158882.1 heavy metal translocating P-type ATPase -
  HPG27_RS03865 (HPG27_748) comM 818019..819539 (-) 1521 WP_000611016.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPG27_RS03870 (HPG27_749) def 819545..820069 (-) 525 WP_001185820.1 peptide deformylase -
  HPG27_RS03875 (HPG27_750) clpP 820074..820661 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPG27_RS03880 (HPG27_751) tig 820682..822037 (-) 1356 WP_001047801.1 trigger factor -
  HPG27_RS03885 (HPG27_752) - 822144..822980 (-) 837 WP_001037699.1 outer membrane protein -
  HPG27_RS03890 (HPG27_753) hpaA 823009..823791 (-) 783 WP_000646645.1 flagellar sheath lipoprotein HpaA -
  HPG27_RS03895 (HPG27_754) moaC 823910..824386 (-) 477 WP_000927594.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57314.39 Da        Isoelectric Point: 8.3899

>NTDB_id=28609 HPG27_RS03865 WP_000611016.1 818019..819539(-) (comM) [Helicobacter pylori G27]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKIIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSLTKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNFEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=28609 HPG27_RS03865 WP_000611016.1 818019..819539(-) (comM) [Helicobacter pylori G27]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAATTCTATTCAAGAAGCCAAACAGCGAGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATTAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCCAAAA
TCATTGCGCCTAAGGCGAATGAGGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCTTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGTGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATTTTGCCTCCATTGAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
TGCCTATTACCCCTTAAGGAGCTTTAGAAATCCCCACCAAAGTGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCTTAACCAAAGCATGCCGTTGCCAAG
ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAATTTTGAAG
CGCAAAAGTTGTTGGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGTTCTGTTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z7F4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.628

100

0.976
  comM Acinetobacter baylyi ADP1

36.399

100

0.368

Multiple sequence alignment