Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EHF39_RS05175 Genome accession   NZ_CP033908
Coordinates   965653..966333 (+) Length   226 a.a.
NCBI ID   WP_002984709.1    Uniprot ID   A2REK0
Organism   Streptococcus pyogenes strain RLGH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 960653..971333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHF39_RS05155 (EHF39_05155) aphA 961079..961810 (+) 732 WP_002984720.1 acid phosphatase AphA -
  EHF39_RS05160 (EHF39_05160) - 961988..963520 (+) 1533 WP_021299392.1 ClC family H(+)/Cl(-) exchange transporter -
  EHF39_RS05165 (EHF39_05165) - 963683..964297 (+) 615 WP_011017748.1 SGNH/GDSL hydrolase family protein -
  EHF39_RS05170 (EHF39_05170) - 964477..965604 (+) 1128 WP_002994399.1 AI-2E family transporter -
  EHF39_RS05175 (EHF39_05175) radC 965653..966333 (+) 681 WP_002984709.1 DNA repair protein RadC Machinery gene
  EHF39_RS05180 (EHF39_05180) - 966335..967030 (-) 696 WP_002989835.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  EHF39_RS05185 (EHF39_05185) - 967040..967684 (-) 645 WP_011528625.1 redox-sensing transcriptional repressor Rex -
  EHF39_RS05190 (EHF39_05190) - 967935..968282 (-) 348 WP_002984704.1 DUF1831 domain-containing protein -
  EHF39_RS05195 (EHF39_05195) - 968272..969399 (-) 1128 WP_002989829.1 cysteine desulfurase family protein -
  EHF39_RS05200 (EHF39_05200) - 969396..970376 (-) 981 WP_060388517.1 ribose-phosphate diphosphokinase -
  EHF39_RS05205 (EHF39_05205) - 970516..971094 (-) 579 WP_011528626.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25742.96 Da        Isoelectric Point: 7.3866

>NTDB_id=285918 EHF39_RS05175 WP_002984709.1 965653..966333(+) (radC) [Streptococcus pyogenes strain RLGH]
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=285918 EHF39_RS05175 WP_002984709.1 965653..966333(+) (radC) [Streptococcus pyogenes strain RLGH]
ATGTATTCTATAAAATGTGATGATAATAAAGCCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACAGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATGATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTATTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTCTCATTGTTATTCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(107-222)

UPF0758 N-terminal (UPF0758_N)

(10-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2REK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

57.965

100

0.58
  radC Streptococcus pneumoniae R6

57.522

100

0.575
  radC Streptococcus pneumoniae D39

57.522

100

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

55.752

100

0.558
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.119

96.46

0.416
  radC Haemophilus influenzae Rd KW20

37.9

96.903

0.367