Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   DBQ26_RS01740 Genome accession   NZ_CP028574
Coordinates   106831..110685 (+) Length   1284 a.a.
NCBI ID   WP_017481715.1    Uniprot ID   A0A9X3QIJ6
Organism   Acinetobacter pittii strain WCHAP005046     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101831..115685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ26_RS01710 (DBQ26_01715) gmk 102113..102742 (-) 630 WP_005804544.1 guanylate kinase -
  DBQ26_RS01715 (DBQ26_01720) ispH 102865..103815 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DBQ26_RS01720 (DBQ26_01725) fimU 103985..104458 (+) 474 WP_017481718.1 pilus assembly FimT family protein Machinery gene
  DBQ26_RS01725 (DBQ26_01730) pilV 104452..105012 (+) 561 WP_079381023.1 type IV pilus modification protein PilV Machinery gene
  DBQ26_RS01730 (DBQ26_01735) pilW 105012..106013 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  DBQ26_RS01735 (DBQ26_01740) pilX 106010..106819 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DBQ26_RS01740 (DBQ26_01745) pilY1 106831..110685 (+) 3855 WP_017481715.1 PilC/PilY family type IV pilus protein Machinery gene
  DBQ26_RS01745 (DBQ26_01750) pilY2 110696..111178 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  DBQ26_RS01750 (DBQ26_01755) pilE 111175..111600 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  DBQ26_RS01755 (DBQ26_01760) rpsP 111748..111999 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  DBQ26_RS01760 (DBQ26_01765) rimM 112019..112567 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  DBQ26_RS01765 (DBQ26_01770) trmD 112610..113365 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DBQ26_RS01770 (DBQ26_01775) rplS 113585..113953 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  DBQ26_RS01775 (DBQ26_01780) lip 114006..114947 (-) 942 WP_080612940.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 1284 a.a.        Molecular weight: 137696.25 Da        Isoelectric Point: 7.7443

>NTDB_id=285574 DBQ26_RS01740 WP_017481715.1 106831..110685(+) (pilY1) [Acinetobacter pittii strain WCHAP005046]
MKLKLKNFKPNNLWYAICSSSVAFTWLMTSSVVQASDLQIYASPTAGKKTIVMMLDTSGSMTNNSYGENRLAMLKNGMNA
FLASNNPVLNDTRVGLGNFSANGDSRSGQVLVAAAPLGDASTLNTVGSQRYKLKQAVANLTAGGSTPSAHAYAEAAAYLM
GTTTYSEANYAIRKDSYIKRVRKSDNRTEYSYCMNYRDSQIDTTNLWQPCRSNSYWSNWSTSNPGVDTATAYDTSSDWTY
SYTYYYTTFNYAVANADSGIPKSKSNDTASNPNIVVDRNASNLNAIYQSPLPAVTNRQSCDGQGIYFLSDGEPNNTTNTR
SATVMSTALGSTLGANFTCSGGLSNTTADSGWACMGEFAKRLFDKTKNPAGVSIQTAFVGFGSDFSSLSSSDVKNACRLS
SRTQSDRKGDDACSPNQTTNAVAAPGYGNGGFFPTQSAQGVTDSVIAFINNLEKVPLQPLTTGAISVPYDALNPKNLQEY
GYLRALEPNPANTYLTWRGNLKKYHVVLSGGNAGAFEANTGGLVYNASGAFRTGTKDYWNSSNYNDGGNVFLGGSYAKVP
LPIAGQNETRDEDGNIIKYYYAVQTKIRNLFTDVSAVAADGSLTKISTSGTNLLKIPAAPPEGTNPFDSVANTASYVLGK
FNASTGQDILKAFPIGLKLKILNYLGYSTDISATTLPSSLVTLNEPYLSMGGSIHSLPVQLTYNGTLDENGNLTSARAQS
ILYGTMEGGLHIVDASTGVEQMAFVPADILNDPVASKALVVGQSDTTAPAHGMDGAWVSDPAYSITTTGSGSSAVSKVTA
KQMNIYGGMRMGGSSYYGLNVLNPASPKLLFRVGADQTDYSRMGQSWSKPVLANIRYNGVIKRVMIVGGGYDQCYENPNI
TLSNSCFTNGKAKGNAVYIIDAKTGERLWWTSDTGSNIDNSNMKHSIVSRISTLDRDADGLVDHLYFGDLGGQIFRIDLN
NNQTKTNSTYSSFGVRVVRLANLATNDATYDSSNDYTAGNAPRFYEPPTVTIHDYGIRTFITVGIASGDRSTPLDVYPLT
GREGMSPSTALSGRPVNNVYGIIDKDFIKKNLMSLTDSQLETKDITRSTLRKNPQILRSGETRVAQIFFPNTGVGQSGWY
RSLSSMSDGTEKANNNFRIKGGLKAFEEPMAITGTLIVPVYDPQGTGIVAADPCLPRVVGETDQQTYCLPFGACLNSDGS
IDQNKENGSGFKTQTGTNCPVGASECNKNVIGSGIRGVTFVPTEDNPPATNSCGKLKLSGNESGTGEWQCTSHLVPARWY
ERYR

Nucleotide


Download         Length: 3855 bp        

>NTDB_id=285574 DBQ26_RS01740 WP_017481715.1 106831..110685(+) (pilY1) [Acinetobacter pittii strain WCHAP005046]
GTGAAACTAAAATTGAAGAATTTTAAGCCAAATAATTTATGGTATGCCATCTGTTCGAGTTCAGTTGCTTTTACATGGCT
AATGACAAGCTCCGTTGTGCAGGCGAGTGATTTACAAATTTATGCTTCACCTACAGCTGGTAAAAAAACTATTGTGATGA
TGTTGGATACATCAGGAAGTATGACCAACAATAGTTATGGCGAAAACCGTCTGGCCATGCTTAAAAATGGTATGAATGCT
TTTTTAGCAAGTAATAATCCTGTTTTAAATGACACTCGTGTGGGGTTGGGAAATTTCTCTGCAAATGGTGATAGCCGAAG
TGGGCAGGTTTTAGTGGCTGCTGCTCCTTTAGGAGATGCGAGTACGTTAAATACAGTGGGTTCTCAACGTTATAAATTAA
AACAGGCTGTTGCAAATTTAACTGCTGGCGGGTCAACGCCTTCAGCACATGCTTATGCGGAAGCTGCTGCTTATTTGATG
GGTACAACGACCTATTCAGAGGCGAATTATGCTATCCGAAAAGATAGCTATATAAAGCGTGTGCGAAAATCTGATAATAG
AACGGAATACTCATATTGTATGAATTATCGCGATTCACAAATCGATACCACAAATCTATGGCAACCTTGTCGCTCTAATA
GCTATTGGAGTAACTGGTCAACTTCTAATCCGGGTGTGGATACGGCAACTGCTTATGATACTTCGTCGGATTGGACCTAT
TCTTATACTTATTACTACACCACCTTTAATTATGCTGTAGCAAATGCAGATAGTGGTATCCCAAAATCAAAATCAAACGA
TACAGCCAGCAATCCCAATATTGTTGTAGATAGAAATGCCTCTAATTTAAATGCTATTTACCAATCTCCTTTACCTGCGG
TGACCAATCGCCAGAGTTGTGATGGGCAAGGAATCTACTTTTTATCAGATGGGGAGCCGAACAATACAACAAATACGCGT
TCTGCAACTGTCATGTCGACAGCCCTAGGCAGCACTTTGGGAGCAAATTTTACTTGTTCTGGAGGTTTGTCTAACACTAC
AGCAGACTCTGGTTGGGCCTGTATGGGGGAATTTGCAAAAAGATTATTTGATAAAACAAAAAACCCAGCTGGGGTTTCTA
TTCAAACAGCATTTGTCGGTTTTGGTAGTGACTTTTCTAGTTTAAGTTCTTCTGATGTAAAAAATGCCTGTCGTTTAAGT
TCGAGAACCCAATCTGACCGAAAAGGAGATGATGCGTGTTCACCGAATCAGACCACAAATGCGGTCGCTGCACCTGGTTA
TGGGAATGGAGGTTTTTTCCCTACCCAAAGTGCGCAAGGTGTAACAGACAGTGTTATCGCATTTATTAATAACTTAGAAA
AAGTTCCGTTACAACCCTTAACCACTGGCGCTATCTCAGTTCCTTATGATGCACTAAACCCTAAAAATTTACAGGAATAT
GGTTACTTACGGGCTTTAGAGCCAAACCCAGCTAACACCTACTTAACATGGCGTGGAAATTTAAAGAAATATCATGTTGT
TTTATCAGGGGGCAATGCAGGTGCTTTTGAAGCTAACACTGGTGGGTTGGTTTACAATGCAAGTGGGGCTTTTAGAACGG
GTACGAAAGATTATTGGAATAGCTCTAATTATAATGATGGAGGTAACGTCTTTTTAGGTGGTTCATATGCAAAAGTTCCT
TTACCAATTGCTGGACAAAATGAAACACGTGATGAAGATGGAAATATCATAAAATATTATTACGCAGTACAAACTAAAAT
CCGCAACTTATTTACTGATGTTTCCGCTGTTGCGGCAGATGGTAGCTTAACGAAAATATCGACTTCTGGAACTAATTTGC
TAAAAATCCCAGCTGCTCCCCCCGAAGGAACTAATCCTTTTGATAGTGTGGCTAATACAGCAAGTTATGTTTTAGGAAAA
TTTAATGCATCAACTGGACAAGATATTTTAAAAGCTTTCCCGATTGGCTTGAAATTAAAAATATTAAATTATCTAGGTTA
CTCAACTGATATTAGCGCTACGACTTTACCTTCGTCATTAGTTACATTGAATGAACCCTATTTATCGATGGGCGGTAGTA
TTCACTCTTTACCAGTACAGCTTACCTATAATGGAACATTAGATGAAAATGGGAATTTAACATCTGCGCGTGCACAATCT
ATTCTCTATGGAACGATGGAAGGTGGTCTGCATATTGTGGATGCTTCAACTGGTGTAGAACAAATGGCTTTCGTTCCCGC
TGATATATTAAATGATCCAGTTGCATCAAAAGCTTTAGTGGTTGGCCAAAGTGACACTACAGCTCCGGCTCACGGTATGG
ATGGGGCTTGGGTATCTGATCCTGCATATAGTATTACTACAACAGGAAGCGGTAGTTCAGCAGTATCAAAAGTAACTGCA
AAGCAAATGAATATTTATGGTGGCATGCGAATGGGGGGCAGCAGTTATTATGGCTTAAATGTCTTAAATCCTGCTTCACC
TAAGCTCCTCTTTAGAGTAGGAGCAGACCAAACTGATTATAGTCGTATGGGGCAGAGTTGGTCTAAACCTGTACTTGCAA
ATATACGTTATAACGGAGTTATTAAACGCGTTATGATTGTTGGTGGTGGCTACGACCAATGTTATGAAAACCCGAATATT
ACCTTGAGCAATTCTTGCTTTACGAATGGAAAAGCAAAAGGGAATGCTGTTTATATTATTGATGCTAAAACTGGGGAGCG
CTTATGGTGGACTAGTGATACAGGCTCTAATATAGATAACTCTAATATGAAGCACAGTATTGTTAGTCGCATTAGTACCT
TAGATCGAGATGCTGATGGTTTAGTCGACCATTTATATTTTGGCGATTTAGGCGGGCAAATTTTCCGTATCGATCTTAAT
AATAACCAGACAAAAACAAATTCAACTTATAGCAGTTTCGGGGTTCGAGTTGTTCGATTAGCCAATTTGGCAACGAATGA
TGCTACTTATGATAGCTCGAACGACTATACCGCTGGGAATGCGCCGCGTTTTTATGAACCGCCCACAGTGACAATTCACG
ATTATGGAATCCGCACTTTTATTACTGTCGGTATTGCTTCAGGTGACCGTAGTACACCTTTAGATGTTTATCCGCTTACA
GGCCGTGAGGGGATGTCACCAAGTACAGCATTAAGTGGAAGACCTGTAAACAACGTTTATGGAATTATCGATAAAGACTT
TATTAAAAAGAATTTAATGTCTTTAACAGATAGCCAGCTTGAAACAAAAGATATTACTCGATCGACGCTTCGAAAAAATC
CACAAATTTTACGGTCTGGGGAAACACGAGTAGCACAGATTTTCTTTCCAAACACTGGGGTCGGGCAAAGTGGTTGGTAT
CGCTCGCTTTCTAGTATGAGCGATGGTACCGAGAAAGCTAATAATAATTTCCGTATTAAAGGTGGGCTAAAAGCTTTTGA
AGAGCCTATGGCAATTACAGGGACTTTAATTGTGCCTGTTTATGACCCGCAGGGAACAGGTATTGTAGCGGCAGACCCAT
GTTTACCCCGTGTAGTAGGTGAAACGGATCAACAGACTTACTGTTTACCATTTGGTGCCTGTCTTAATTCTGATGGGTCA
ATTGATCAAAATAAAGAGAATGGAAGTGGATTCAAAACACAAACTGGTACTAATTGCCCAGTAGGAGCTTCCGAATGTAA
TAAAAACGTTATTGGCTCCGGTATTCGTGGCGTAACATTTGTACCAACGGAGGATAACCCACCTGCGACTAATAGTTGTG
GGAAATTAAAGCTGTCTGGAAACGAGAGTGGAACGGGCGAGTGGCAATGTACAAGTCACTTAGTTCCTGCGCGCTGGTAT
GAGCGTTATCGCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(710-965)

von Willebrand factor type A domain (VWA_2)

(51-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

84.729

100

0.851

Multiple sequence alignment