Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | DBQ26_RS01720 | Genome accession | NZ_CP028574 |
| Coordinates | 103985..104458 (+) | Length | 157 a.a. |
| NCBI ID | WP_017481718.1 | Uniprot ID | A0A9X3QJB9 |
| Organism | Acinetobacter pittii strain WCHAP005046 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 98985..109458
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBQ26_RS01695 (DBQ26_01700) | spoT | 99447..101552 (-) | 2106 | WP_017481720.1 | RelA/SpoT family protein | - |
| DBQ26_RS01700 (DBQ26_01705) | - | 101571..101723 (-) | 153 | WP_107908592.1 | hypothetical protein | - |
| DBQ26_RS01705 (DBQ26_01710) | rpoZ | 101762..102040 (-) | 279 | WP_002116990.1 | DNA-directed RNA polymerase subunit omega | - |
| DBQ26_RS01710 (DBQ26_01715) | gmk | 102113..102742 (-) | 630 | WP_005804544.1 | guanylate kinase | - |
| DBQ26_RS01715 (DBQ26_01720) | ispH | 102865..103815 (+) | 951 | WP_002116992.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| DBQ26_RS01720 (DBQ26_01725) | fimU | 103985..104458 (+) | 474 | WP_017481718.1 | pilus assembly FimT family protein | Machinery gene |
| DBQ26_RS01725 (DBQ26_01730) | pilV | 104452..105012 (+) | 561 | WP_079381023.1 | type IV pilus modification protein PilV | Machinery gene |
| DBQ26_RS01730 (DBQ26_01735) | pilW | 105012..106013 (+) | 1002 | WP_017481717.1 | PilW family protein | Machinery gene |
| DBQ26_RS01735 (DBQ26_01740) | pilX | 106010..106819 (+) | 810 | WP_017481716.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16925.59 Da Isoelectric Point: 7.7942
>NTDB_id=285570 DBQ26_RS01720 WP_017481718.1 103985..104458(+) (fimU) [Acinetobacter pittii strain WCHAP005046]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNNPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNNPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=285570 DBQ26_RS01720 WP_017481718.1 103985..104458(+) (fimU) [Acinetobacter pittii strain WCHAP005046]
ATGAGGGGAATTATTCCGCAAGATGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATTGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGATGTTTCTATTAATCTGAATTCAACAGCTTTAAATAATCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA
ATGAGGGGAATTATTCCGCAAGATGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATTGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGATGTTTCTATTAATCTGAATTCAACAGCTTTAAATAATCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACCAATATCACCCAAGACACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
87.898 |
100 |
0.879 |